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Lj2g3v1019980.1

Overview

Field Value
Gene ID Lj2g3v1019980
Transcript ID Lj2g3v1019980.1
Lotus japonicus genome version MG20 v3.0
Description SAG101 [Medicago truncatula] gi|357496089|ref|XP_003618333.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 364 364 2.00E-160
PANTHER 1 364 364 2.00E-160
Phobius 1 31 31
Phobius 1 10 10
Gene3D 4 87 84 1.50E-17
Pfam 6 84 79 3.20E-13
SUPERFAMILY 6 87 82 6.84E-11
Phobius 11 26 16
TMHMM 12 31 20
Phobius 27 31 5
Phobius 32 471 440
Gene3D 414 452 39 1.50E-17

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Expression data

Expression pattern

Expression pattern of Lj2g3v1019980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1019980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.