Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1171110.1

Overview

Field Value
Gene ID Lj2g3v1171110
Transcript ID Lj2g3v1171110.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like [Glycine max] gi|356495986|ref|XP_003516851.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31140
14 323 310 1.40E-170 –
PANTHER
PTHR31140:SF3
14 323 310 1.40E-170 –
SUPERFAMILY
SSF54171
57 113 57 1.77E-17
IPR016177
CDD
cd00018
57 112 56 1.04E-25
IPR001471
Pfam
PF00847
57 105 49 3.30E-09
IPR001471
ProSiteProfiles
PS51032
58 113 56 20.257
IPR001471
SMART
SM00380
58 119 62 8.70E-30
IPR001471
Gene3D
G3DSA:3.30.730.10
58 113 56 7.50E-21
IPR001471
Gene3D
G3DSA:2.40.330.10
179 290 112 2.60E-32
IPR015300
SUPERFAMILY
SSF101936
182 281 100 1.57E-24
IPR015300
CDD
cd10017
183 274 92 1.59E-22
IPR003340
Pfam
PF02362
185 283 99 2.30E-21
IPR003340
SMART
SM01019
185 291 107 3.20E-14
IPR003340
ProSiteProfiles
PS50863
185 291 107 10.602
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v1171110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1171110.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.