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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1192960 |
| Transcript ID | Lj2g3v1192960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Glycine max] gi|356502702|ref|XP_003520156.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 224 | 245 | 22 | – | – | |
| MobiDBLite | 324 | 368 | 45 | – | – | |
| MobiDBLite | 474 | 493 | 20 | – | – | |
| MobiDBLite | 551 | 576 | 26 | – | – | |
| MobiDBLite | 600 | 642 | 43 | – | – | |
| MobiDBLite | 704 | 737 | 34 | – | – | |
| MobiDBLite | 763 | 798 | 36 | – | – | |
| MobiDBLite | 843 | 878 | 36 | – | – | |
| MobiDBLite | 923 | 997 | 75 | – | – | |
| PANTHER | 1054 | 1247 | 194 | 3.80E-109 | – | |
| PANTHER | 1054 | 1247 | 194 | 3.80E-109 | – | |
| MobiDBLite | 1091 | 1114 | 24 | – | – | |
| Gene3D | 1126 | 1298 | 173 | 3.40E-56 | – | |
| SUPERFAMILY | 1135 | 1305 | 171 | 3.35E-47 | ||
| ProSiteProfiles | 1138 | 1260 | 123 | 32.796 | ||
| Pfam | 1140 | 1239 | 100 | 2.20E-27 | ||
| CDD | 1144 | 1251 | 108 | 1.90E-48 | – | |
| Hamap | 1144 | 1301 | 158 | 39.157 | ||
| PANTHER | 1267 | 1308 | 42 | 3.80E-109 | – | |
| PANTHER | 1267 | 1308 | 42 | 3.80E-109 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble adenosine to inosine editing | The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine. | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | TRNA-specific adenosine deaminase activity | Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a tRNA molecule. |
Expression pattern of Lj2g3v1192960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1192960.1, powered by CORGI.
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