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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016193
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.524s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0066279.1
n.a. PREDICTED: guanine deaminase-like isoform X1 [Cicer arietinum] gi|502086321|ref|XP_004488180.1| chr0 23273854 23276241 -
2 domain predictions
1 GO term
Lj0g3v0132579.1
n.a. PREDICTED: riboflavin biosynthesis protein RibD-like [Glycine max] gi|356506247|ref|XP_003521898.1| chr0 60515534 60518148 -
2 domain predictions
1 GO term
Lj0g3v0249449.1
n.a. PREDICTED: bifunctional purine biosynthesis protein PurH-like [Glycine max] gi|356508292|ref|XP_003522892.1| chr0 129252091 129259168 -
2 domain predictions
1 GO term
Lj0g3v0249449.2
n.a. PREDICTED: bifunctional purine biosynthesis protein PurH-like [Glycine max] gi|356508292|ref|XP_003522892.1| chr0 129252091 129259168 -
2 domain predictions
1 GO term
Lj0g3v0284819.1
n.a. PREDICTED: deoxycytidylate deaminase-like [Cicer arietinum] gi|502176161|ref|XP_004515811.1| chr0 147764954 147768976 +
2 domain predictions
1 GO term
Lj1g3v2835980.1
n.a. PREDICTED: riboflavin biosynthesis protein RibD-like [Cicer arietinum] gi|502105588|ref|XP_004492842.1| chr1 32204682 32209784 +
2 domain predictions
1 GO term
Lj2g3v0912020.1
n.a. Cytidine deaminase [Medicago truncatula] gi|357501295|ref|XP_003620936.1| chr2 13982652 13983996 +
2 domain predictions
1 GO term
Lj2g3v1192960.1
n.a. PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Glycine max] gi|356502702|ref|XP_003520156.1| chr2 18834305 18843959 -
2 domain predictions
1 GO term
Lj3g3v1294540.1
n.a. PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like [Glycine max] gi|356547101|ref|XP_003541956.1| chr3 16496838 16501300 -
2 domain predictions
1 GO term
Lj4g3v2137110.1
n.a. PREDICTED: tRNA-specific adenosine deaminase 2 [Glycine max] gi|356549373|ref|XP_003543068.1| chr4 29361681 29365776 -
2 domain predictions
1 GO term
Lj4g3v2225630.1
n.a. PREDICTED: tRNA-specific adenosine deaminase-like [Cicer arietinum] gi|502150685|ref|XP_004508073.1| chr4 30827425 30830361 +
2 domain predictions
1 GO term
Lj4g3v3015270.1
n.a. Cytidine deaminase [Medicago truncatula] gi|357520685|ref|XP_003630631.1| chr4 40403284 40404570 -
2 domain predictions
1 GO term
LotjaGi1g1v0486000.1
n.a. Riboflavin biosynthesis protein RibD; TAIR: AT3G47390.2 cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q9STY4|RIBRX_ARATH Riboflavin biosynthesis protein PYRR, chloroplastic; TrEMBL-Plants: tr|A0A1J7G1G5|A0A1J7G1G5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0486000 LjG1.1_chr1 99913085 99918192 +
2 domain predictions
1 GO term
LotjaGi2g1v0233100.1
n.a. Cytidine deaminase; TAIR: AT2G19570.1 cytidine deaminase 1; Swiss-Prot: sp|O65896|CDA1_ARATH Cytidine deaminase 1; TrEMBL-Plants: tr|A0A1J7HS04|A0A1J7HS04_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0233100 LjG1.1_chr2 69211049 69213386 +
2 domain predictions
1 GO term
LotjaGi2g1v0284200.1
n.a. tRNA-specific adenosine deaminase; TAIR: AT1G68720.1 tRNA arginine adenosine deaminase; Swiss-Prot: sp|Q9S7I0|TADA_ARATH tRNA(adenine(34)) deaminase, chloroplastic; TrEMBL-Plants: tr|K7K815|K7K815_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0284200 LjG1.1_chr2 75706485 75728433 -
2 domain predictions
1 GO term
LotjaGi3g1v0107300.1
n.a. Bifunctional purine biosynthesis protein PurH; TAIR: AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; Swiss-Prot: sp|Q0AW31|PUR9_SYNWW Bifunctional purine biosynthesis protein PurH; TrEMBL-Plants: tr|A0A151RCA3|A0A151RCA3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0107300 LjG1.1_chr3 13234438 13242295 -
2 domain predictions
1 GO term
LotjaGi3g1v0107300.2
n.a. Bifunctional purine biosynthesis protein PurH; TAIR: AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; Swiss-Prot: sp|Q0AW31|PUR9_SYNWW Bifunctional purine biosynthesis protein PurH; TrEMBL-Plants: tr|A0A151RCA3|A0A151RCA3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0107300 LjG1.1_chr3 13234960 13242191 -
2 domain predictions
1 GO term
LotjaGi3g1v0107300.3
n.a. Bifunctional purine biosynthesis protein PurH; TAIR: AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; Swiss-Prot: sp|Q0AW31|PUR9_SYNWW Bifunctional purine biosynthesis protein PurH; TrEMBL-Plants: tr|A0A151RCA3|A0A151RCA3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0107300 LjG1.1_chr3 13235181 13240599 -
2 domain predictions
1 GO term
LotjaGi3g1v0107300.4
n.a. Bifunctional purine biosynthesis protein PurH; TAIR: AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; Swiss-Prot: sp|Q0AW31|PUR9_SYNWW Bifunctional purine biosynthesis protein PurH; TrEMBL-Plants: tr|A0A151RCA3|A0A151RCA3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0107300 LjG1.1_chr3 13235181 13240685 -
2 domain predictions
1 GO term
LotjaGi3g1v0183700.1
n.a. tRNA-specific adenosine deaminase; TAIR: AT5G24670.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3; TrEMBL-Plants: tr|I3SWE8|I3SWE8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183700 LjG1.1_chr3 25740156 25747807 -
2 domain predictions
1 GO term
LotjaGi3g1v0183700.2
n.a. tRNA-specific adenosine deaminase; TAIR: AT5G24670.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3; TrEMBL-Plants: tr|I3SWE8|I3SWE8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183700 LjG1.1_chr3 25740420 25746874 -
2 domain predictions
1 GO term
LotjaGi3g1v0183700.3
n.a. tRNA-specific adenosine deaminase; TAIR: AT5G24670.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3; TrEMBL-Plants: tr|I3SWE8|I3SWE8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183700 LjG1.1_chr3 25740481 25745974 -
2 domain predictions
1 GO term
LotjaGi4g1v0221700.1
n.a. Deoxycytidylate deaminase; TAIR: AT3G48540.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase; TrEMBL-Plants: tr|I1K0B7|I1K0B7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0221700 LjG1.1_chr4 52573439 52577636 +
2 domain predictions
1 GO term
LotjaGi4g1v0305600.1
n.a. Deaminase-related family protein; TAIR: AT1G48175.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2; TrEMBL-Plants: tr|A0A0L9TEI2|A0A0L9TEI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0305600 LjG1.1_chr4 68122050 68125936 -
2 domain predictions
1 GO term
LotjaGi4g1v0317000.1
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|I3SAE1|I3SAE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0317000 LjG1.1_chr4 69423326 69426469 -
2 domain predictions
1 GO term
LotjaGi4g1v0317000.2
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|I3SAE1|I3SAE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0317000 LjG1.1_chr4 69423828 69425762 -
2 domain predictions
1 GO term
LotjaGi4g1v0345400.1
n.a. Riboflavin biosynthesis protein ribD; TAIR: AT4G20960.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q8GWP5|RIBD_ARATH Riboflavin biosynthesis protein PYRD, chloroplastic; TrEMBL-Plants: tr|A0A151T5Q7|A0A151T5Q7_CAJCA Riboflavin biosynthesis protein ribD; Found in the gene: LotjaGi4g1v0345400 LjG1.1_chr4 72515767 72519861 +
2 domain predictions
1 GO term
LotjaGi5g1v0214600.1
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|A0A0S3SQ64|A0A0S3SQ64_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214600 LjG1.1_chr5 52012179 52016375 +
2 domain predictions
1 GO term
LotjaGi5g1v0214600.2
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|K7N544|K7N544_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214600 LjG1.1_chr5 52013064 52014746 +
2 domain predictions
1 GO term
LotjaGi5g1v0214600.3
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|K7N544|K7N544_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214600 LjG1.1_chr5 52013606 52014746 +
2 domain predictions
1 GO term
LotjaGi6g1v0218000.1
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|T2DMP6|T2DMP6_PHAVU Cytidine/deoxycytidylate deaminase; Found in the gene: LotjaGi6g1v0218000 LjG1.1_chr6 52035802 52047359 -
2 domain predictions
1 GO term
LotjaGi6g1v0218000.3
n.a. Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|G7IQF5|G7IQF5_MEDTR Cytidine/deoxycytidylate deaminase family protein; Found in the gene: LotjaGi6g1v0218000 LjG1.1_chr6 52045021 52046208 -
2 domain predictions
1 GO term