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Lj2g3v1192990.1

Overview

Field Value
Gene ID Lj2g3v1192990
Transcript ID Lj2g3v1192990.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: CRS2-associated factor 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502102996|ref|XP_004492171.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31846
14 390 377 1.40E-224 –
PANTHER
PTHR31846:SF3
14 390 377 1.40E-224 –
MobiDBLite
mobidb-lite
63 109 47 – –
ProSiteProfiles
PS51295
178 276 99 18.229
IPR001890
SUPERFAMILY
SSF75471
180 274 95 1.14E-20
IPR001890
Gene3D
G3DSA:3.30.110.60
180 274 95 2.30E-18
IPR001890
SMART
SM01103
180 265 86 1.20E-18
IPR001890
Pfam
PF01985
181 265 85 5.10E-18
IPR001890
ProSiteProfiles
PS51295
298 394 97 16.181
IPR001890
SUPERFAMILY
SSF75471
300 385 86 3.66E-19
IPR001890
Pfam
PF01985
300 383 84 1.10E-12
IPR001890
SMART
SM01103
300 383 84 1.70E-12
IPR001890
Gene3D
G3DSA:3.30.110.60
300 388 89 4.70E-13
IPR001890

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj2g3v1192990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1192990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.