Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1267190.2

Overview

Field Value
Gene ID Lj2g3v1267190
Transcript ID Lj2g3v1267190.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein GDAP2 homolog isoform X2 [Cicer arietinum] gi|502094120|ref|XP_004490144.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11106
25 557 533 0 –
PANTHER
PTHR11106:SF65
25 557 533 0 –
SUPERFAMILY
SSF52949
71 281 211 1.06E-46 –
ProSiteProfiles
PS51154
72 252 181 20.942
IPR002589
Gene3D
G3DSA:3.40.220.10
82 259 178 2.70E-53 –
CDD
cd02905
83 221 139 1.07E-81 –
SMART
SM00506
84 213 130 1.10E-07
IPR002589
Pfam
PF01661
101 213 113 1.30E-25
IPR002589
SMART
SM00516
388 534 147 4.70E-06
IPR001251
SUPERFAMILY
SSF52087
389 525 137 1.12E-11
IPR001251
Gene3D
G3DSA:3.40.525.10
391 525 135 4.80E-05
IPR001251
CDD
cd00170
395 528 134 5.42E-20 –
Pfam
PF13716
407 536 130 1.00E-27
IPR001251

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj2g3v1267190.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1267190.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.