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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002589
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.807s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0255149.1
n.a. PREDICTED: macro domain-containing protein XCC3184-like [Cicer arietinum] gi|502124370|ref|XP_004498498.1| chr0 132467822 132470396 -
4 domain predictions
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Lj0g3v0272549.2
n.a. n.a. chr0 141233800 141235665 +
3 domain predictions
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Lj0g3v0316429.1
n.a. PREDICTED: transcription factor bHLH140-like [Glycine max] gi|356496191|ref|XP_003516953.1| chr0 165240944 165245336 +
4 domain predictions
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Lj2g3v1267190.1
n.a. PREDICTED: protein GDAP2 homolog isoform X2 [Cicer arietinum] gi|502094120|ref|XP_004490144.1| chr2 20148090 20156049 +
4 domain predictions
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Lj2g3v1267190.2
n.a. PREDICTED: protein GDAP2 homolog isoform X2 [Cicer arietinum] gi|502094120|ref|XP_004490144.1| chr2 20148090 20156049 +
4 domain predictions
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LotjaGi1g1v0308900.1
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi1g1v0308900 LjG1.1_chr1 75039883 75042633 -
4 domain predictions
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LotjaGi2g1v0297800.1
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|V7CH06|V7CH06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242029 77250523 +
4 domain predictions
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LotjaGi2g1v0297800.2
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|A0A072UEM6|A0A072UEM6_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242651 77249723 +
3 domain predictions
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LotjaGi2g1v0297800.3
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|V7CH06|V7CH06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242651 77249881 +
4 domain predictions
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LotjaGi2g1v0297800.4
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|V7CH06|V7CH06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77242651 77249881 +
4 domain predictions
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LotjaGi2g1v0297800.5
n.a. Appr-1-P processing enzyme family protein; TAIR: AT1G69340.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog; TrEMBL-Plants: tr|G7JXV5|G7JXV5_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi2g1v0297800 LjG1.1_chr2 77244157 77249881 +
3 domain predictions
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LotjaGi5g1v0023700.1
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149703 4170126 +
4 domain predictions
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LotjaGi5g1v0023700.2
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149703 4170130 +
4 domain predictions
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LotjaGi5g1v0023700.3
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149706 4169453 +
4 domain predictions
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LotjaGi5g1v0023700.4
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149729 4169496 +
4 domain predictions
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LotjaGi5g1v0023700.5
n.a. Appr-1-P processing enzyme family protein; TAIR: AT2G40600.1 appr-1-p processing enzyme family protein; Swiss-Prot: sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184; TrEMBL-Plants: tr|G7I3E3|G7I3E3_MEDTR Appr-1-P processing enzyme family protein; Found in the gene: LotjaGi5g1v0023700 LjG1.1_chr5 4149749 4154346 +
4 domain predictions
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LotjaGi5g1v0162600.1
n.a. Transcription factor bHLH140; TAIR: AT5G01310.1 APRATAXIN-like protein; Swiss-Prot: sp|Q9M041|BH140_ARATH Transcription factor bHLH140; TrEMBL-Plants: tr|K7K399|K7K399_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0162600 LjG1.1_chr5 41773907 41780331 +
4 domain predictions
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