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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1267220 |
| Transcript ID | Lj2g3v1267220.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|18409250|ref|NP_564961.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 303 | 300 | 0 | – | |
| PANTHER | 4 | 303 | 300 | 0 | – | |
| ProSiteProfiles | 63 | 97 | 35 | 7.125 | ||
| ProSiteProfiles | 101 | 135 | 35 | 6.347 | ||
| ProSiteProfiles | 136 | 166 | 31 | 6.127 | ||
| Gene3D | 166 | 197 | 32 | 2.20E-06 | ||
| ProSiteProfiles | 167 | 201 | 35 | 12.682 | ||
| Pfam | 167 | 214 | 48 | 2.80E-07 | ||
| TIGRFAM | 169 | 203 | 35 | 1.20E-08 | ||
| ProSiteProfiles | 202 | 236 | 35 | 5.393 | ||
| ProSiteProfiles | 237 | 267 | 31 | 5.799 | ||
| Gene3D | 265 | 298 | 34 | 2.20E-06 | ||
| Pfam | 267 | 313 | 47 | 4.80E-08 | ||
| ProSiteProfiles | 268 | 302 | 35 | 10.643 | ||
| TIGRFAM | 271 | 304 | 34 | 4.20E-07 | ||
| ProSiteProfiles | 303 | 337 | 35 | 6.106 | ||
| Gene3D | 356 | 466 | 111 | 6.40E-05 | ||
| ProSiteProfiles | 370 | 404 | 35 | 11.498 | ||
| Pfam | 370 | 410 | 41 | 4.30E-08 | ||
| TIGRFAM | 372 | 405 | 34 | 1.40E-04 | ||
| ProSiteProfiles | 439 | 469 | 31 | 8.298 | ||
| PANTHER | 440 | 748 | 309 | 0 | – | |
| PANTHER | 440 | 748 | 309 | 0 | – | |
| Pfam | 469 | 509 | 41 | 1.50E-09 | ||
| ProSiteProfiles | 470 | 504 | 35 | 9.788 | ||
| TIGRFAM | 472 | 505 | 34 | 3.00E-06 | ||
| ProSiteProfiles | 505 | 539 | 35 | 6.215 | ||
| Gene3D | 534 | 630 | 97 | 6.40E-05 | ||
| ProSiteProfiles | 540 | 570 | 31 | 8.21 | ||
| Pfam | 570 | 617 | 48 | 3.50E-11 | ||
| ProSiteProfiles | 571 | 605 | 35 | 12.123 | ||
| TIGRFAM | 573 | 607 | 35 | 2.20E-08 | ||
| ProSiteProfiles | 606 | 640 | 35 | 9.876 | ||
| TIGRFAM | 608 | 642 | 35 | 2.50E-05 | ||
| ProSiteProfiles | 641 | 671 | 31 | 6.73 | ||
| ProSiteProfiles | 673 | 703 | 31 | 6.226 | ||
| ProSiteProfiles | 707 | 741 | 35 | 7.903 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1267220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1267220.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.