Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1366010.1

Overview

Field Value
Gene ID Lj2g3v1366010
Transcript ID Lj2g3v1366010.1
Lotus japonicus genome version MG20 v3.0
Description type A response regulator RR1 [Phaseolus vulgaris] gi|125658123|gb|ABN48988.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.2300
19 141 123 2.40E-33 –
SUPERFAMILY
SSF52172
19 139 121 1.04E-26
IPR011006
PANTHER
PTHR26402
20 143 124 3.40E-78 –
PANTHER
PTHR26402:SF526
20 143 124 3.40E-78 –
SMART
SM00448
20 143 124 9.80E-18
IPR001789
ProSiteProfiles
PS50110
21 147 127 32.348
IPR001789
Pfam
PF00072
22 139 118 4.10E-20
IPR001789
CDD
cd00156
23 146 124 5.35E-21 –
MobiDBLite
mobidb-lite
150 236 87 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000160
Biological process Phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v1366010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1366010.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.