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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR26402
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 41 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.040s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050029.1
n.a. Response regulator [Medicago truncatula] gi|357463135|ref|XP_003601849.1| chr0 16970859 16975533 +
1 domain prediction
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Lj0g3v0078699.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr0 30323301 30324157 +
1 domain prediction
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Lj0g3v0195339.1
n.a. PREDICTED: two-component response regulator ARR11-like [Glycine max] gi|356538109|ref|XP_003537547.1| chr0 95317646 95321902 -
1 domain prediction
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Lj0g3v0253349.1
n.a. PREDICTED: two-component response regulator-like APRR7-like [Glycine max] gi|356545957|ref|XP_003541399.1| chr0 131543249 131548902 +
1 domain prediction
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Lj0g3v0262279.1
n.a. Response regulator [Medicago truncatula] gi|357463135|ref|XP_003601849.1| chr0 135931975 135936649 -
1 domain prediction
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Lj0g3v0337759.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr0 176900933 176901808 -
1 domain prediction
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Lj1g3v0416300.1
n.a. PREDICTED: two-component response regulator ARR15-like [Cicer arietinum] gi|502134002|ref|XP_004501966.1| chr1 5695242 5697660 +
1 domain prediction
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Lj1g3v0416300.2
n.a. PREDICTED: two-component response regulator ARR15-like [Cicer arietinum] gi|502134002|ref|XP_004501966.1| chr1 5695242 5697660 +
1 domain prediction
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Lj1g3v0841370.1
n.a. PREDICTED: two-component response regulator ARR9-like [Glycine max] gi|356515915|ref|XP_003526642.1| chr1 10868879 10871985 -
1 domain prediction
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Lj1g3v1076690.1
n.a. PREDICTED: two-component response regulator-like PRR95-like [Glycine max] gi|356518667|ref|XP_003528000.1| chr1 13194487 13199352 -
1 domain prediction
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Lj1g3v1137240.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR17-like [Cicer arietinum] gi|502136761|ref|XP_004502823.1| chr1 14124879 14126575 +
1 domain prediction
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Lj1g3v1147290.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR17-like [Cicer arietinum] gi|502136761|ref|XP_004502823.1| chr1 14147367 14149142 -
1 domain prediction
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Lj1g3v1147290.2
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR17-like [Cicer arietinum] gi|502136761|ref|XP_004502823.1| chr1 14147367 14149376 -
1 domain prediction
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Lj1g3v1821080.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356515054|ref|XP_003526216.1| chr1 22290141 22301638 -
1 domain prediction
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Lj1g3v3150020.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X6 [Cicer arietinum] gi|502157433|ref|XP_004510876.1| chr1 35867347 35873862 -
1 domain prediction
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Lj1g3v4170190.1
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502108246|ref|XP_004493425.1| chr1 49523251 49525659 +
1 domain prediction
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Lj1g3v5060610.1
n.a. pseudo response regulator [Populus trichocarpa] gi|224132554|ref|XP_002321349.1| chr1 61881402 61881695 +
1 domain prediction
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Lj1g3v5060620.1
n.a. PREDICTED: two-component response regulator-like PRR95-like [Glycine max] gi|356571269|ref|XP_003553801.1| chr1 61881794 61882440 +
1 domain prediction
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Lj2g3v1079520.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr2 17544243 17546166 -
1 domain prediction
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Lj2g3v1366010.1
n.a. type A response regulator RR1 [Phaseolus vulgaris] gi|125658123|gb|ABN48988.1| chr2 21466831 21468438 -
1 domain prediction
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Lj3g3v0765990.1
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502158094|ref|XP_004511028.1| chr3 9115959 9117747 -
1 domain prediction
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Lj3g3v0765990.2
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502158094|ref|XP_004511028.1| chr3 9115959 9117748 -
1 domain prediction
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Lj3g3v1876170.2
n.a. PREDICTED: two-component response regulator ARR8-like [Glycine max] gi|356555024|ref|XP_003545839.1| chr3 24144451 24144982 -
1 domain prediction
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Lj3g3v1876170.3
n.a. PREDICTED: two-component response regulator ARR9-like [Cicer arietinum] gi|502158094|ref|XP_004511028.1| chr3 24144932 24146608 -
1 domain prediction
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Lj3g3v2517630.1
n.a. PREDICTED: two-component response regulator-like PRR95-like isoform 1 [Glycine max] gi|356520225|ref|XP_003528764.1| chr3 30835070 30838827 +
1 domain prediction
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Lj3g3v2517630.2
n.a. PREDICTED: two-component response regulator-like PRR95-like isoform 1 [Glycine max] gi|356520225|ref|XP_003528764.1| chr3 30835070 30840596 +
1 domain prediction
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Lj4g3v0668260.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356556600|ref|XP_003546612.1| chr4 10972140 10973962 +
1 domain prediction
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Lj4g3v1561740.1
n.a. PREDICTED: two-component response regulator ARR5-like [Cicer arietinum] gi|502152207|ref|XP_004508816.1| chr4 23292048 23293154 +
1 domain prediction
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Lj4g3v1561740.2
n.a. PREDICTED: two-component response regulator ARR5-like isoform 1 [Glycine max] gi|356562779|ref|XP_003549646.1| chr4 23292048 23293154 +
1 domain prediction
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Lj4g3v1658890.1
n.a. PREDICTED: two-component response regulator-like APRR1-like isoform X3 [Cicer arietinum] gi|502152014|ref|XP_004508722.1| chr4 24242250 24246621 +
1 domain prediction
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Lj4g3v1658890.2
n.a. PREDICTED: two-component response regulator-like APRR1-like [Glycine max] gi|356513521|ref|XP_003525462.1| chr4 24242250 24251518 +
1 domain prediction
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Lj4g3v2286050.1
n.a. PREDICTED: two-component response regulator ARR2-like [Glycine max] gi|356521815|ref|XP_003529546.1| chr4 31796606 31799768 -
1 domain prediction
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Lj4g3v2286050.2
n.a. PREDICTED: two-component response regulator ARR2-like [Glycine max] gi|356521815|ref|XP_003529546.1| chr4 31796606 31799768 -
1 domain prediction
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Lj4g3v3113240.1
n.a. PREDICTED: two-component response regulator ARR2-like isoform X1 [Cicer arietinum] gi|502123743|ref|XP_004498241.1| chr4 41628829 41631066 +
1 domain prediction
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Lj5g3v0523200.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356562101|ref|XP_003549312.1| chr5 5499107 5503976 -
1 domain prediction
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Lj5g3v0554360.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR12-like [Glycine max] gi|356554201|ref|XP_003545437.1| chr5 6662293 6663851 -
1 domain prediction
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Lj5g3v0554370.1
n.a. PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR12-like [Glycine max] gi|356554201|ref|XP_003545437.1| chr5 6664126 6664516 -
1 domain prediction
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Lj5g3v0615690.1
n.a. PREDICTED: two-component response regulator-like APRR7-like [Glycine max] gi|356545957|ref|XP_003541399.1| chr5 7866317 7878113 -
1 domain prediction
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Lj5g3v0659720.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356515054|ref|XP_003526216.1| chr5 9279481 9282099 +
1 domain prediction
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Lj6g3v1078590.1
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356530639|ref|XP_003533888.1| chr6 12927441 12932314 -
1 domain prediction
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Lj6g3v1078590.2
n.a. PREDICTED: two-component response regulator ARR12-like [Glycine max] gi|356556600|ref|XP_003546612.1| chr6 12927441 12932314 -
1 domain prediction
 –