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Lj2g3v1367150.1

Overview

Field Value
Gene ID Lj2g3v1367150
Transcript ID Lj2g3v1367150.1
Lotus japonicus genome version MG20 v3.0
Description Matrix metalloproteinase-14 [Medicago truncatula] gi|357486211|ref|XP_003613393.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 9 9 – –
Phobius
SIGNAL_PEPTIDE
1 27 27 – –
SignalP
SignalP-noTM_EUK
1 27 27 – –
PANTHER
PTHR10201
4 25 22 2.60E-33 –
PANTHER
PTHR10201:SF140
4 25 22 2.60E-33 –
Phobius
SIGNAL_PEPTIDE_H_REGION
10 22 13 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
23 27 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
28 216 189 – –
PANTHER
PTHR10201
66 203 138 2.60E-33 –
PANTHER
PTHR10201:SF140
66 203 138 2.60E-33 –
SUPERFAMILY
SSF47090
74 146 73 8.48E-17
IPR002477
Gene3D
G3DSA:1.10.101.10
81 146 66 2.20E-17
IPR002477
Pfam
PF01471
81 134 54 1.40E-11
IPR002477
ProSitePatterns
PS00546
139 146 8 –
IPR021158

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004222
Molecular function Metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0031012
Cellular component Extracellular matrix A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1367150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1367150.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.