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Lj2g3v1368200.1

Overview

Field Value
Gene ID Lj2g3v1368200
Transcript ID Lj2g3v1368200.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable cytosolic iron-sulfur protein assembly protein 1-like [Cicer arietinum] gi|502141265|ref|XP_004504504.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22844
14 143 130 5.30E-188 –
PANTHER
PTHR22844:SF159
14 143 130 5.30E-188 –
MobiDBLite
mobidb-lite
18 59 42 – –
SMART
SM00320
59 96 38 1.6
IPR001680
Gene3D
G3DSA:2.130.10.10
60 147 88 4.90E-09
IPR015943
SUPERFAMILY
SSF50978
61 147 87 1.21E-49
IPR017986
SMART
SM00320
108 142 35 1.4
IPR001680
Pfam
PF00400
124 142 19 0.24
IPR001680
CDD
cd00200
125 422 298 1.11E-41 –
Gene3D
G3DSA:2.130.10.10
186 424 239 1.80E-48
IPR015943
SMART
SM00320
186 225 40 7.10E-04
IPR001680
ProSiteProfiles
PS50082
193 234 42 10.976
IPR001680
PANTHER
PTHR22844
193 424 232 5.30E-188 –
ProSiteProfiles
PS50294
193 368 176 30.637
IPR017986
PANTHER
PTHR22844:SF159
193 424 232 5.30E-188 –
SUPERFAMILY
SSF50978
194 422 229 1.21E-49
IPR017986
Pfam
PF00400
194 224 31 0.0011
IPR001680
SMART
SM00320
228 267 40 7.80E-06
IPR001680
Pfam
PF00400
230 267 38 0.082
IPR001680
ProSiteProfiles
PS50082
236 276 41 11.578
IPR001680
SMART
SM00320
274 313 40 2.00E-06
IPR001680
Pfam
PF00400
278 312 35 0.002
IPR001680
ProSiteProfiles
PS50082
281 313 33 13.048
IPR001680
SMART
SM00320
322 359 38 6.70E-05
IPR001680
Pfam
PF00400
327 358 32 0.0016
IPR001680
ProSiteProfiles
PS50082
329 358 30 10.809
IPR001680
SMART
SM00320
365 422 58 8.30E-04
IPR001680
Pfam
PF00400
367 421 55 0.0014
IPR001680

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1368200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1368200.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.