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Lj2g3v1439670.1

Overview

Field Value
Gene ID Lj2g3v1439670
Transcript ID Lj2g3v1439670.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ZF-HD homeobox protein At5g65410-like [Cicer arietinum] gi|502092759|ref|XP_004489767.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31948:SF13
1 253 253 9.30E-118 –
PANTHER
PTHR31948
1 253 253 9.30E-118 –
ProDom
PD125774
57 111 55 6.00E-23
IPR006456
TIGRFAM
TIGR01566
58 108 51 6.30E-30
IPR006456
Pfam
PF04770
58 109 52 3.20E-29
IPR006456
ProSiteProfiles
PS51523
59 108 50 27.752
IPR006456
MobiDBLite
mobidb-lite
163 197 35 – –
Gene3D
G3DSA:1.10.10.60
180 252 73 5.70E-31
IPR009057
SUPERFAMILY
SSF46689
180 251 72 1.79E-18
IPR009057
TIGRFAM
TIGR01565
190 246 57 5.00E-26
IPR006455

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1439670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1439670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.