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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006456
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 46 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.785s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0058889.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356522109|ref|XP_003529692.1| chr0 19426472 19428679 +
5 domain predictions
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Lj0g3v0224609.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356512948|ref|XP_003525176.1| chr0 116049441 116050242 -
5 domain predictions
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Lj0g3v0229569.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356574811|ref|XP_003555538.1| chr0 118869111 118870236 +
5 domain predictions
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Lj0g3v0229739.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356502059|ref|XP_003519839.1| chr0 118985779 118986555 +
5 domain predictions
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Lj0g3v0268869.1
n.a. Mini zinc finger 2 isoform 2, partial [Theobroma cacao] gi|508711560|gb|EOY03457.1| chr0 139273347 139274181 -
5 domain predictions
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Lj0g3v0268879.1
n.a. Mini zinc finger 2 isoform 2, partial [Theobroma cacao] gi|508711560|gb|EOY03457.1| chr0 139273412 139274181 -
5 domain predictions
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Lj0g3v0306449.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Fragaria vesca subsp]. vesca] gi|470137085|ref|XP_004304308.1| chr0 159906858 159908427 -
5 domain predictions
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Lj0g3v0321019.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356502059|ref|XP_003519839.1| chr0 167587874 167588545 +
4 domain predictions
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Lj1g3v0244390.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Cicer arietinum] gi|502095238|ref|XP_004490406.1| chr1 2347266 2348558 +
5 domain predictions
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Lj1g3v0491080.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356507135|ref|XP_003522326.1| chr1 6471318 6472179 +
5 domain predictions
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Lj1g3v1638760.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356515706|ref|XP_003526539.1| chr1 19452663 19454147 +
5 domain predictions
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Lj1g3v2925250.1
n.a. Zinc finger-homeodomain protein [Medicago truncatula] gi|357489885|ref|XP_003615230.1| chr1 32975298 32976011 +
5 domain predictions
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Lj2g3v0635660.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Cucumis sativus] gi|449439493|ref|XP_004137520.1| chr2 9827043 9827940 +
5 domain predictions
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Lj2g3v1058090.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660 [Glycine max] gi|356550827|ref|XP_003543785.1| chr2 16829096 16829331 +
5 domain predictions
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Lj2g3v1058120.1
n.a. PREDICTED: transcription factor HB29-like [Cicer arietinum] gi|502101016|ref|XP_004491795.1| chr2 16845217 16846078 -
5 domain predictions
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Lj2g3v1277940.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356497896|ref|XP_003517792.1| chr2 20519295 20520521 +
5 domain predictions
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Lj2g3v1439670.1
n.a. PREDICTED: ZF-HD homeobox protein At5g65410-like [Cicer arietinum] gi|502092759|ref|XP_004489767.1| chr2 22780394 22781703 +
5 domain predictions
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Lj2g3v1745000.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356538194|ref|XP_003537589.1| chr2 26885704 26886474 -
5 domain predictions
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Lj2g3v1757070.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356496749|ref|XP_003517228.1| chr2 26928774 26932026 -
5 domain predictions
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Lj4g3v0015460.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356522109|ref|XP_003529692.1| chr4 222745 224610 -
5 domain predictions
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Lj4g3v0962260.1
n.a. PREDICTED: ZF-HD homeobox protein At5g65410-like [Glycine max] gi|356503018|ref|XP_003520309.1| chr4 14108193 14110915 +
5 domain predictions
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Lj4g3v0962270.1
n.a. PREDICTED: ZF-HD homeobox protein At5g65410-like [Glycine max] gi|356503018|ref|XP_003520309.1| chr4 14108193 14110913 +
5 domain predictions
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Lj4g3v2313490.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Cicer arietinum] gi|502161149|ref|XP_004512050.1| chr4 32191232 32191801 +
5 domain predictions
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Lj5g3v0526310.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356519856|ref|XP_003528585.1| chr5 5549731 5550947 +
5 domain predictions
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Lj5g3v2258260.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356550836|ref|XP_003543789.1| chr5 32680289 32681236 +
5 domain predictions
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Lj5g3v2258280.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660 [Glycine max] gi|356550827|ref|XP_003543785.1| chr5 32696799 32697034 -
5 domain predictions
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LotjaGi1g1v0136800_LC.1
n.a. Zinc finger family protein; TAIR: AT3G28917.1 mini zinc finger 2; Swiss-Prot: sp|Q9LJW5|MIF2_ARATH Mini zinc finger protein 2; TrEMBL-Plants: tr|B9H0F7|B9H0F7_POPTR Zinc finger family protein; Found in the gene: LotjaGi1g1v0136800_LC LjG1.1_chr1 22354441 22354989 -
3 domain predictions
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LotjaGi1g1v0139600.1
n.a. Zinc finger homeodomain protein 1; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|Q9SB61|ZHD2_ARATH Zinc-finger homeodomain protein 2; TrEMBL-Plants: tr|G7KBF3|G7KBF3_MEDTR Homeobox domain, ZF-HD class protein; Found in the gene: LotjaGi1g1v0139600 LjG1.1_chr1 22907687 22909969 +
4 domain predictions
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LotjaGi1g1v0219600.1
n.a. Zinc finger family protein; TAIR: AT1G18835.1 mini zinc finger; Swiss-Prot: sp|Q2Q493|MIF3_ARATH Mini zinc finger protein 3; TrEMBL-Plants: tr|I3SFZ7|I3SFZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0219600 LjG1.1_chr1 48727327 48727578 +
4 domain predictions
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LotjaGi1g1v0349600.1
n.a. Zinc finger homeodomain protein 1; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|A2Z259|ZHD1_ORYSI Zinc-finger homeodomain protein 1; TrEMBL-Plants: tr|V7ASQ1|V7ASQ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0349600 LjG1.1_chr1 81940625 81943035 +
4 domain predictions
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LotjaGi1g1v0502500_LC.1
n.a. Zinc finger family protein; TAIR: AT3G28917.1 mini zinc finger 2; Swiss-Prot: sp|Q9LJW5|MIF2_ARATH Mini zinc finger protein 2; TrEMBL-Plants: tr|A0A061EEU8|A0A061EEU8_THECC Mini zinc finger 2 isoform 1; Found in the gene: LotjaGi1g1v0502500_LC LjG1.1_chr1 101970376 101971308 +
4 domain predictions
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LotjaGi1g1v0502600.1
n.a. Zinc finger-homeodomain protein 1; TAIR: AT5G15210.1 homeobox protein 30; Swiss-Prot: sp|Q9LXG0|ZHD8_ARATH Zinc-finger homeodomain protein 8; TrEMBL-Plants: tr|A2Q1B8|A2Q1B8_MEDTR Homeobox domain, ZF-HD class protein; Found in the gene: LotjaGi1g1v0502600 LjG1.1_chr1 102014925 102016820 -
4 domain predictions
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LotjaGi2g1v0188100.1
n.a. Zinc finger homeodomain protein; TAIR: AT2G02540.1 homeobox protein 21; Swiss-Prot: sp|B8AX53|ZHD6_ORYSI Zinc-finger homeodomain protein 6; TrEMBL-Plants: tr|A0A072UBE0|A0A072UBE0_MEDTR Zinc finger homeodomain protein; Found in the gene: LotjaGi2g1v0188100 LjG1.1_chr2 61772708 61773668 +
4 domain predictions
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LotjaGi2g1v0259400.1
n.a. Zinc finger-homeodomain protein 1; TAIR: AT5G15210.1 homeobox protein 30; Swiss-Prot: sp|Q9LXG0|ZHD8_ARATH Zinc-finger homeodomain protein 8; TrEMBL-Plants: tr|I1LWK4|I1LWK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0259400 LjG1.1_chr2 72734029 72737401 -
4 domain predictions
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LotjaGi2g1v0303700.1
n.a. Zinc finger homeodomain protein; TAIR: AT1G69600.1 zinc finger homeodomain 1; Swiss-Prot: sp|Q9SEZ1|ZHD11_ARATH Zinc-finger homeodomain protein 11; TrEMBL-Plants: tr|I1JE45|I1JE45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0303700 LjG1.1_chr2 77747862 77751719 +
4 domain predictions
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LotjaGi2g1v0326000.1
n.a. Zinc finger homeodomain protein 1; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|A2Z259|ZHD1_ORYSI Zinc-finger homeodomain protein 1; TrEMBL-Plants: tr|A0A0L9UB56|A0A0L9UB56_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0326000 LjG1.1_chr2 80136725 80138355 +
4 domain predictions
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LotjaGi2g1v0389600.1
n.a. Zinc finger-homeodomain protein 1; TAIR: AT2G18350.1 homeobox protein 24; Swiss-Prot: sp|Q9ZPW7|ZHD6_ARATH Zinc-finger homeodomain protein 6; TrEMBL-Plants: tr|A0A1J7G2W1|A0A1J7G2W1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0389600 LjG1.1_chr2 88548405 88552068 -
4 domain predictions
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LotjaGi3g1v0231500.1
n.a. Zinc finger homeodomain protein; TAIR: AT5G42780.1 homeobox protein 27; Swiss-Prot: sp|Q9FMY7|ZHD13_ARATH Zinc-finger homeodomain protein 13; TrEMBL-Plants: tr|K7LVB6|K7LVB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0231500 LjG1.1_chr3 36331674 36332538 +
4 domain predictions
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LotjaGi3g1v0231900.1
n.a. Zinc finger homeodomain protein; TAIR: AT5G42780.1 homeobox protein 27; Swiss-Prot: sp|Q9FMY7|ZHD13_ARATH Zinc-finger homeodomain protein 13; TrEMBL-Plants: tr|A0A0L9VGB3|A0A0L9VGB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0231900 LjG1.1_chr3 36452283 36453049 +
4 domain predictions
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LotjaGi4g1v0002300.1
n.a. ZF-HD homeobox protein family; TAIR: AT1G14440.1 homeobox protein 31; Swiss-Prot: sp|Q9M9S0|ZHD4_ARATH Zinc-finger homeodomain protein 4; TrEMBL-Plants: tr|A0A151SB96|A0A151SB96_CAJCA ZF-HD homeobox protein family; Found in the gene: LotjaGi4g1v0002300 LjG1.1_chr4 419756 421967 -
4 domain predictions
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LotjaGi4g1v0090100.1
n.a. Zinc finger-homeodomain protein 1; TAIR: AT5G15210.1 homeobox protein 30; Swiss-Prot: sp|Q9LXG0|ZHD8_ARATH Zinc-finger homeodomain protein 8; TrEMBL-Plants: tr|A0A0L9TLQ3|A0A0L9TLQ3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0090100 LjG1.1_chr4 11937198 11938487 +
4 domain predictions
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LotjaGi4g1v0118300_LC.1
n.a. Zinc finger family protein; TAIR: AT2G18350.1 homeobox protein 24; Swiss-Prot: sp|Q9ZPW7|ZHD6_ARATH Zinc-finger homeodomain protein 6; TrEMBL-Plants: tr|V7CGK1|V7CGK1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0118300_LC LjG1.1_chr4 17126536 17129593 +
4 domain predictions
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LotjaGi4g1v0160900.1
n.a. ZF-HD homeobox protein family; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|A2Z259|ZHD1_ORYSI Zinc-finger homeodomain protein 1; TrEMBL-Plants: tr|A0A0S3R2K2|A0A0S3R2K2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0160900 LjG1.1_chr4 28684543 28685850 -
4 domain predictions
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LotjaGi4g1v0340900.1
n.a. Zinc finger homeodomain protein; TAIR: AT5G42780.1 homeobox protein 27; Swiss-Prot: sp|Q9FKJ9|ZHD12_ARATH Zinc-finger homeodomain protein 12; TrEMBL-Plants: tr|A0A0L9VGB3|A0A0L9VGB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0340900 LjG1.1_chr4 72094236 72095079 -
4 domain predictions
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LotjaGi4g1v0341200.1
n.a. Zinc finger homeodomain protein; TAIR: AT5G60480.1 homeobox protein 26; Swiss-Prot: sp|Q9FKJ9|ZHD12_ARATH Zinc-finger homeodomain protein 12; TrEMBL-Plants: tr|A0A0L9VGB3|A0A0L9VGB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0341200 LjG1.1_chr4 72109452 72110396 -
4 domain predictions
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LotjaGi5g1v0196600_LC.1
n.a. Zinc finger-homeodomain protein 1; TAIR: AT1G14440.1 homeobox protein 31; Swiss-Prot: sp|Q9M9S0|ZHD4_ARATH Zinc-finger homeodomain protein 4; TrEMBL-Plants: tr|K7N4V5|K7N4V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0196600_LC LjG1.1_chr5 49240949 49242417 +
4 domain predictions
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