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Lj2g3v1509440.1

Overview

Field Value
Gene ID Lj2g3v1509440
Transcript ID Lj2g3v1509440.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description MYB transcription factor MYB34 [Medicago truncatula] gi|131054094|gb|ABO32773.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31496
1 372 372 2.00E-181 –
PANTHER
PTHR31496:SF10
1 372 372 2.00E-181 –
MobiDBLite
mobidb-lite
1 30 30 – –
MobiDBLite
mobidb-lite
150 174 25 – –
SUPERFAMILY
SSF46689
192 248 57 3.94E-15
IPR009057
Gene3D
G3DSA:1.10.10.60
193 248 56 2.60E-27
IPR009057
TIGRFAM
TIGR01557
195 248 54 3.10E-23
IPR006447
Pfam
PF00249
196 247 52 6.50E-07
IPR001005
MobiDBLite
mobidb-lite
313 373 61 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj2g3v1509440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1509440.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.