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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006447
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 199 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.592s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050029.1
n.a. Response regulator [Medicago truncatula] gi|357463135|ref|XP_003601849.1| chr0 16970859 16975533 +
2 domain predictions
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Lj0g3v0078699.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr0 30323301 30324157 +
2 domain predictions
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Lj0g3v0089499.1
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502137504|ref|XP_004503104.1| chr0 36732316 36737500 -
2 domain predictions
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Lj0g3v0089499.2
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502137504|ref|XP_004503104.1| chr0 36732316 36737500 -
2 domain predictions
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Lj0g3v0089699.1
n.a. MYB transcription factor MYB109 [Glycine max] gi|351727817|ref|NP_001235894.1| chr0 36855445 36857239 -
2 domain predictions
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Lj0g3v0109229.1
n.a. MYB-type transcription factor [Lotus japonicus] gi|283132363|dbj|BAI63587.1| chr0 47252336 47254764 -
2 domain predictions
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Lj0g3v0127839.1
n.a. PREDICTED: probable transcription factor KAN4-like [Glycine max] gi|356564221|ref|XP_003550354.1| chr0 57680753 57683381 -
2 domain predictions
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Lj0g3v0129219.1
n.a. Two-component response regulator ARR1 [Medicago truncatula] gi|357483025|ref|XP_003611799.1| chr0 58467263 58469482 -
2 domain predictions
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Lj0g3v0205019.1
n.a. Homeodomain-like superfamily protein isoform 2, partial [Theobroma cacao] gi|508701203|gb|EOX93099.1| chr0 101912082 101918064 -
2 domain predictions
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Lj0g3v0212129.1
n.a. MYB transcription factor MYB57 [Glycine max] gi|351721486|ref|NP_001235675.1| chr0 106991900 106994399 -
2 domain predictions
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Lj0g3v0221649.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr0 113870294 113879963 -
2 domain predictions
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Lj0g3v0223589.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
2 domain predictions
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Lj0g3v0223589.2
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
2 domain predictions
 –
Lj0g3v0251039.1
n.a. Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gi|508781804|gb|EOY29060.1| chr0 130163620 130168326 +
2 domain predictions
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Lj0g3v0262279.1
n.a. Response regulator [Medicago truncatula] gi|357463135|ref|XP_003601849.1| chr0 135931975 135936649 -
2 domain predictions
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Lj0g3v0337759.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr0 176900933 176901808 -
2 domain predictions
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Lj1g3v0416400.1
n.a. MYB transcription factor MYB143 [Glycine max] gi|351723925|ref|NP_001236016.1| chr1 5726804 5729020 +
2 domain predictions
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Lj1g3v2372410.1
n.a. Two-component response regulator ARR10 [Medicago truncatula] gi|357506085|ref|XP_003623331.1| chr1 27896686 27899248 -
2 domain predictions
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Lj1g3v4024040.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr1 47614675 47619631 -
2 domain predictions
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Lj1g3v4048450.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502107507|ref|XP_004493285.1| chr1 47857089 47861308 +
2 domain predictions
 –
Lj1g3v4048450.2
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Cicer arietinum] gi|502107510|ref|XP_004493286.1| chr1 47857089 47861308 +
2 domain predictions
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Lj1g3v4093220.1
n.a. Two-component response regulator ARR1 [Medicago truncatula] gi|357509257|ref|XP_003624917.1| chr1 48400861 48405174 -
2 domain predictions
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Lj1g3v4139540.2
n.a. PREDICTED: transcription factor DIVARICATA-like [Cicer arietinum] gi|502097263|ref|XP_004490951.1| chr1 49073167 49074810 +
2 domain predictions
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Lj1g3v4317480.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357509909|ref|XP_003625243.1| chr1 50739391 50745097 -
2 domain predictions
 –
Lj1g3v4317480.2
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357509909|ref|XP_003625243.1| chr1 50739391 50745097 -
2 domain predictions
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Lj1g3v4317520.1
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502109125|ref|XP_004493572.1| chr1 50763840 50766550 -
2 domain predictions
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Lj1g3v4317520.2
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502109125|ref|XP_004493572.1| chr1 50763840 50766156 -
2 domain predictions
 –
Lj1g3v4515910.1
n.a. Two-component response regulator ARR [Medicago truncatula] gi|357510131|ref|XP_003625354.1| chr1 53138045 53144475 -
2 domain predictions
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Lj1g3v4998480.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502113704|ref|XP_004494732.1| chr1 60806217 60810231 +
2 domain predictions
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Lj2g3v0621850.2
n.a. MYB transcription factor MYB131 [Glycine max] gi|110931850|gb|ABH02924.1| chr2 8857474 8861062 -
2 domain predictions
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Lj2g3v0636680.1
n.a. PREDICTED: transcription repressor KAN1-like [Cicer arietinum] gi|502164944|ref|XP_004513340.1| chr2 10227063 10237509 +
2 domain predictions
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Lj2g3v0636680.2
n.a. PREDICTED: transcription repressor KAN1-like [Cicer arietinum] gi|502164944|ref|XP_004513340.1| chr2 10227063 10237509 +
2 domain predictions
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Lj2g3v0780580.1
n.a. Two-component response regulator ARR1 [Medicago truncatula] gi|357483025|ref|XP_003611799.1| chr2 12486314 12488285 -
2 domain predictions
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Lj2g3v0911840.1
n.a. PREDICTED: transcription factor MYB1R1 [Glycine max] gi|356513215|ref|XP_003525309.1| chr2 13932863 13934495 +
2 domain predictions
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Lj2g3v1079520.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr2 17544243 17546166 -
2 domain predictions
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Lj2g3v1168830.1
n.a. MYB-type transcription factor [Lotus japonicus] gi|283132363|dbj|BAI63587.1| chr2 18447738 18450177 -
2 domain predictions
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Lj2g3v1277750.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502143659|ref|XP_004505417.1| chr2 20438190 20439795 +
2 domain predictions
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Lj2g3v1364760.1
n.a. MYB transcription factor MYB138 [Glycine max] gi|351722587|ref|NP_001237761.1| chr2 21371025 21372927 +
2 domain predictions
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Lj2g3v1509440.1
n.a. MYB transcription factor MYB34 [Medicago truncatula] gi|131054094|gb|ABO32773.1| chr2 23785446 23791455 -
2 domain predictions
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Lj2g3v1509440.2
n.a. MYB transcription factor MYB34 [Medicago truncatula] gi|131054094|gb|ABO32773.1| chr2 23785446 23791455 -
2 domain predictions
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Lj2g3v1536360.1
n.a. PREDICTED: myb family transcription factor APL-like [Glycine max] gi|356495941|ref|XP_003516829.1| chr2 24213475 24217148 +
2 domain predictions
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Lj2g3v1831990.1
n.a. Two-component response regulator ARR1 [Medicago truncatula] gi|357483025|ref|XP_003611799.1| chr2 27685681 27687953 +
2 domain predictions
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Lj2g3v1890900.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr2 28090580 28091206 -
2 domain predictions
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Lj2g3v1902070.1
n.a. PREDICTED: transcription factor ASG4 [Glycine max] gi|356576006|ref|XP_003556126.1| chr2 28183451 28185452 +
2 domain predictions
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Lj2g3v1985390.1
n.a. PREDICTED: two-component response regulator-like APRR2-like [Glycine max] gi|356540587|ref|XP_003538769.1| chr2 29367611 29374819 -
2 domain predictions
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Lj2g3v2510050.1
n.a. MYB transcription factor MYB177 [Glycine max] gi|351725365|ref|NP_001236066.1| chr2 34906910 34910768 -
2 domain predictions
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Lj2g3v2535460.1
n.a. PREDICTED: transcription repressor KAN1-like [Glycine max] gi|356551997|ref|XP_003544358.1| chr2 35019993 35024446 -
2 domain predictions
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Lj3g3v0277880.1
n.a. MYB transcription factor MYB52 [Medicago truncatula] gi|149727987|gb|ABR28340.1| chr3 1754401 1758212 +
2 domain predictions
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Lj3g3v0948270.1
n.a. IPN2 [Lotus japonicus] gi|311780285|gb|ADQ08683.1| chr3 11599502 11601909 -
2 domain predictions
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Lj3g3v0948270.2
n.a. IPN2 [Lotus japonicus] gi|311780285|gb|ADQ08683.1| chr3 11599502 11601909 -
2 domain predictions
 –