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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1536240 |
| Transcript ID | Lj2g3v1536240.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: secretory carrier-associated membrane protein 4-like [Cicer arietinum] gi|502162283|ref|XP_004512452.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 3.40E-196 | ||
| MobiDBLite | 1 | 64 | 64 | – | – | |
| Phobius | 1 | 121 | 121 | – | – | |
| PANTHER | 1 | 267 | 267 | 3.40E-196 | – | |
| Coils | 65 | 85 | 21 | – | – | |
| Pfam | 96 | 266 | 171 | 3.40E-55 | ||
| Phobius | 122 | 149 | 28 | – | – | |
| TMHMM | 125 | 147 | 23 | – | – | |
| Phobius | 150 | 154 | 5 | – | – | |
| TMHMM | 152 | 174 | 23 | – | – | |
| Phobius | 155 | 174 | 20 | – | – | |
| Phobius | 175 | 185 | 11 | – | – | |
| Phobius | 186 | 213 | 28 | – | – | |
| TMHMM | 187 | 209 | 23 | – | – | |
| Phobius | 214 | 232 | 19 | – | – | |
| Phobius | 233 | 257 | 25 | – | – | |
| TMHMM | 235 | 257 | 23 | – | – | |
| Phobius | 258 | 268 | 11 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj2g3v1536240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1536240.1, powered by CORGI.
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