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Lj2g3v1548460.1

Overview

Field Value
Gene ID Lj2g3v1548460
Transcript ID Lj2g3v1548460.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Cicer arietinum] gi|502162127|ref|XP_004512401.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF16900
1 98 98 1.90E-28
IPR031657
TIGRFAM
TIGR00617
1 313 313 1.20E-110
IPR004591
PANTHER
PTHR23273:SF12
1 331 331 1.20E-205 –
PANTHER
PTHR23273
1 331 331 1.20E-205 –
SUPERFAMILY
SSF50249
2 119 118 6.28E-25
IPR012340
Gene3D
G3DSA:2.40.50.140
2 118 117 2.30E-30 –
CDD
cd04475
6 113 108 1.05E-35 –
SUPERFAMILY
SSF50249
137 314 178 1.37E-56
IPR012340
CDD
cd04476
140 313 174 4.98E-69 –
Pfam
PF08646
156 307 152 5.80E-52
IPR013955
Gene3D
G3DSA:2.40.50.140
165 314 150 5.00E-52 –
SMART
SM00343
389 405 17 0.058
IPR001878
Gene3D
G3DSA:4.10.60.10
389 441 53 2.80E-11
IPR001878
ProSiteProfiles
PS50158
390 403 14 8.515
IPR001878
SUPERFAMILY
SSF57756
424 452 29 1.54E-08
IPR001878
SMART
SM00343
434 450 17 9.20E-05
IPR001878
Pfam
PF00098
434 449 16 7.40E-06
IPR001878
ProSiteProfiles
PS50158
435 449 15 10.493
IPR001878
Gene3D
G3DSA:4.10.60.10
442 490 49 4.60E-11
IPR001878
SUPERFAMILY
SSF57756
461 493 33 1.73E-08
IPR001878
SMART
SM00343
475 491 17 9.20E-05
IPR001878
Pfam
PF00098
475 490 16 3.50E-07
IPR001878
ProSiteProfiles
PS50158
476 490 15 10.46
IPR001878

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0006310
Biological process DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1548460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1548460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.