Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1549660.1

Overview

Field Value
Gene ID Lj2g3v1549660
Transcript ID Lj2g3v1549660.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357484621|ref|XP_003612598.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50297
10 151 142 39.815
IPR020683
SMART
SM00248
10 40 31 2200
IPR002110
SUPERFAMILY
SSF48403
13 154 142 1.31E-36
IPR020683
Gene3D
G3DSA:1.25.40.20
13 93 81 6.20E-22
IPR020683
PANTHER
PTHR24198
15 151 137 1.30E-35 –
Pfam
PF12796
15 70 56 2.80E-09
IPR020683
CDD
cd00204
39 151 113 1.20E-29 –
ProSiteProfiles
PS50088
44 76 33 10.259
IPR002110
SMART
SM00248
44 73 30 0.0011
IPR002110
PRINTS
PR01415
45 60 16 1.40E-05
IPR002110
ProSiteProfiles
PS50088
77 109 33 10.259
IPR002110
SMART
SM00248
77 106 30 0.24
IPR002110
Pfam
PF12796
83 160 78 6.70E-13
IPR020683
Gene3D
G3DSA:1.25.40.20
94 153 60 2.70E-20
IPR020683
SMART
SM00248
110 139 30 1.30E-04
IPR002110
ProSiteProfiles
PS50088
110 142 33 12.983
IPR002110
PRINTS
PR01415
126 140 15 1.40E-05
IPR002110
MobiDBLite
mobidb-lite
163 229 67 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v1549660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1549660.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.