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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PR01415
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We have found 55 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.022s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0067589.1
n.a. PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like isoform X1 [Cicer arietinum] gi|502086635|ref|XP_004488278.1| chr0 24022976 24033487 -
2 domain predictions
1 GO term
Lj0g3v0067589.2
n.a. PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like isoform X1 [Cicer arietinum] gi|502086635|ref|XP_004488278.1| chr0 24022976 24033487 -
2 domain predictions
1 GO term
Lj0g3v0201559.1
n.a. PREDICTED: E3 ubiquitin-protein ligase KEG-like [Glycine max] gi|356539563|ref|XP_003538267.1| chr0 99665394 99673549 -
2 domain predictions
1 GO term
Lj0g3v0201559.2
n.a. PREDICTED: E3 ubiquitin-protein ligase KEG-like [Glycine max] gi|356539563|ref|XP_003538267.1| chr0 99665394 99673549 -
2 domain predictions
1 GO term
Lj0g3v0217539.1
n.a. PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase KEG-like [Cicer arietinum] gi|502124821|ref|XP_004498687.1| chr0 110739047 110742288 -
2 domain predictions
1 GO term
Lj0g3v0236929.1
n.a. PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max] gi|356559851|ref|XP_003548210.1| chr0 122797373 122804327 +
2 domain predictions
1 GO term
Lj0g3v0347009.1
n.a. PREDICTED: protein TANC1-like [Cicer arietinum] gi|502166647|ref|XP_004513946.1| chr0 182044309 182047467 -
2 domain predictions
1 GO term
Lj1g3v0998730.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 2-like [Glycine max] gi|356509224|ref|XP_003523351.1| chr1 12659912 12665557 +
2 domain predictions
1 GO term
Lj1g3v3975850.1
n.a. PREDICTED: ankyrin repeat and protein kinase domain-containing protein 1-like [Fragaria vesca subsp]. vesca] gi|470103946|ref|XP_004288386.1| chr1 47057981 47060560 -
2 domain predictions
1 GO term
Lj2g3v0782660.1
n.a. PREDICTED: protein CbxX, chromosomal-like [Glycine max] gi|356520543|ref|XP_003528921.1| chr2 12520130 12524279 -
2 domain predictions
1 GO term
Lj2g3v1267150.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cicer arietinum] gi|502094108|ref|XP_004490141.1| chr2 20137901 20140988 +
2 domain predictions
1 GO term
Lj2g3v1549660.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357484621|ref|XP_003612598.1| chr2 24367334 24368454 -
2 domain predictions
1 GO term
Lj2g3v1549990.1
n.a. PREDICTED: ankyrin-3-like [Cicer arietinum] gi|502162024|ref|XP_004512364.1| chr2 24480513 24483513 -
2 domain predictions
1 GO term
Lj2g3v2794550.1
n.a. PREDICTED: ankyrin-2-like [Cicer arietinum] gi|502097529|ref|XP_004491016.1| chr2 36796984 36798899 +
2 domain predictions
1 GO term
Lj3g3v0489500.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 30-like [Glycine max] gi|356544173|ref|XP_003540529.1| chr3 5791560 5794647 -
2 domain predictions
1 GO term
Lj3g3v0838340.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum] gi|502127941|ref|XP_004499884.1| chr3 10563585 10565697 -
2 domain predictions
1 GO term
Lj4g3v2023790.1
n.a. PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XBAT32-like [Cicer arietinum] gi|502150110|ref|XP_004507793.1| chr4 28189677 28195088 -
2 domain predictions
1 GO term
Lj5g3v1681470.1
n.a. PREDICTED: ankyrin-2-like [Cicer arietinum] gi|502118004|ref|XP_004496053.1| chr5 23906559 23909353 -
2 domain predictions
1 GO term
Lj6g3v0959380.1
n.a. PREDICTED: protein TANC1-like [Cicer arietinum] gi|502166647|ref|XP_004513946.1| chr6 10740673 10743933 +
2 domain predictions
1 GO term
Lj6g3v2274490.1
n.a. Potassium channel [Medicago truncatula] gi|357445481|ref|XP_003593018.1| chr6 26475069 26482462 +
2 domain predictions
1 GO term
Lj6g3v2274590.1
n.a. PREDICTED: LOW QUALITY PROTEIN: potassium channel AKT2/3-like [Cicer arietinum] gi|502076890|ref|XP_004485488.1| chr6 26507978 26511739 +
2 domain predictions
1 GO term
LotjaGi1g1v0074700.1
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT2G03430.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q08DV6|ASB3_BOVIN Ankyrin repeat and SOCS box protein 3; TrEMBL-Plants: tr|I1JIE8|I1JIE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0074700 LjG1.1_chr1 10801351 10803782 -
2 domain predictions
1 GO term
LotjaGi1g1v0096100.1
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14566954 14578142 +
2 domain predictions
1 GO term
LotjaGi1g1v0096100.2
n.a. Potassium channel; TAIR: AT3G02850.1 STELAR K+ outward rectifier; Swiss-Prot: sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR; TrEMBL-Plants: tr|I1MBT8|I1MBT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0096100 LjG1.1_chr1 14571761 14577342 +
2 domain predictions
1 GO term
LotjaGi1g1v0214300.1
n.a. Ankyrin repeat domain-containing protein; TAIR: AT5G40160.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9SQK3|EM506_ARATH Ankyrin repeat domain-containing protein EMB506, chloroplastic; TrEMBL-Plants: tr|A0A151U9M3|A0A151U9M3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214300 LjG1.1_chr1 47267834 47278488 +
2 domain predictions
1 GO term
LotjaGi1g1v0289200.1
n.a. Acyl-CoA-binding domain protein; TAIR: AT4G27780.1 acyl-CoA binding protein 2; Swiss-Prot: sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2; TrEMBL-Plants: tr|I1KAV2|I1KAV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0289200 LjG1.1_chr1 70080517 70086426 -
2 domain predictions
1 GO term
LotjaGi1g1v0621100.2
n.a. Ankyrin repeat; TAIR: AT5G14230.1 ankyrin; Swiss-Prot: sp|Q8C8R3|ANK2_MOUSE Ankyrin-2; TrEMBL-Plants: tr|A0A151RJD0|A0A151RJD0_CAJCA Putative ankyrin repeat protein RF-0381; Found in the gene: LotjaGi1g1v0621100 LjG1.1_chr1 116855343 116858290 -
2 domain predictions
1 GO term
LotjaGi1g1v0621100.3
n.a. Ankyrin repeat; TAIR: AT5G14230.1 ankyrin; Swiss-Prot: sp|Q8C8R3|ANK2_MOUSE Ankyrin-2; TrEMBL-Plants: tr|A0A151RJD0|A0A151RJD0_CAJCA Putative ankyrin repeat protein RF-0381; Found in the gene: LotjaGi1g1v0621100 LjG1.1_chr1 116855343 116858766 -
2 domain predictions
1 GO term
LotjaGi1g1v0646300.1
n.a. Ankyrin repeat-containing protein; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50; TrEMBL-Plants: tr|A0A1J7G1T5|A0A1J7G1T5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0646300 LjG1.1_chr1 120349995 120352484 -
2 domain predictions
1 GO term
LotjaGi1g1v0782500.1
n.a. Ankyrin repeat protein; TAIR: AT3G04710.1 ankyrin repeat family protein; Swiss-Prot: sp|G5E8K5|ANK3_MOUSE Ankyrin-3; TrEMBL-Plants: tr|I1NCA3|I1NCA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0782500 LjG1.1_chr1 135561234 135566370 -
2 domain predictions
1 GO term
LotjaGi2g1v0146500.1
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|V7C2F7|V7C2F7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0146500 LjG1.1_chr2 52723847 52731478 -
2 domain predictions
1 GO term
LotjaGi2g1v0217200.1
n.a. Ankyrin repeat-containing protein; TAIR: AT3G24530.1 AAA-type ATPase family protein / ankyrin repeat family protein; Swiss-Prot: sp|O22034|CFXQ2_CYACA Protein CfxQ homolog; TrEMBL-Plants: tr|I1KIQ6|I1KIQ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0217200 LjG1.1_chr2 67168129 67172656 -
2 domain predictions
1 GO term
LotjaGi2g1v0217200.2
n.a. Ankyrin repeat-containing protein; TAIR: AT3G24530.2 AAA-type ATPase family protein / ankyrin repeat family protein; Swiss-Prot: sp|O22034|CFXQ2_CYACA Protein CfxQ homolog; TrEMBL-Plants: tr|V7C640|V7C640_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0217200 LjG1.1_chr2 67168881 67171391 -
2 domain predictions
1 GO term
LotjaGi2g1v0297500.1
n.a. Ankyrin repeat family protein; TAIR: AT2G03430.1 Ankyrin repeat family protein; Swiss-Prot: sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10; TrEMBL-Plants: tr|I3RZ67|I3RZ67_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0297500 LjG1.1_chr2 77231391 77234848 +
2 domain predictions
1 GO term
LotjaGi2g1v0343800.1
n.a. Ankyrin repeat family protein; TAIR: AT4G19150.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381; TrEMBL-Plants: tr|I3SSN7|I3SSN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0343800 LjG1.1_chr2 82094657 82098706 -
2 domain predictions
1 GO term
LotjaGi2g1v0345000.1
n.a. Ankyrin repeat family protein; TAIR: AT5G07840.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q8C8R3|ANK2_MOUSE Ankyrin-2; TrEMBL-Plants: tr|C6TMS2|C6TMS2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0345000 LjG1.1_chr2 82206423 82210447 -
2 domain predictions
1 GO term
LotjaGi3g1v0060800.1
n.a. Zinc finger CCCH domain-containing protein; TAIR: AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain-containing protein; Swiss-Prot: sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30; TrEMBL-Plants: tr|I1LVD6|I1LVD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0060800 LjG1.1_chr3 6429998 6435092 -
2 domain predictions
1 GO term
LotjaGi3g1v0060800.2
n.a. Zinc finger CCCH domain-containing protein; TAIR: AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain-containing protein; Swiss-Prot: sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30; TrEMBL-Plants: tr|I1LVD6|I1LVD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0060800 LjG1.1_chr3 6431799 6433919 -
2 domain predictions
1 GO term
LotjaGi3g1v0108600.1
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381294 13406224 +
2 domain predictions
1 GO term
LotjaGi3g1v0108600.2
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A1J7IRE0|A0A1J7IRE0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13385193 +
2 domain predictions
1 GO term
LotjaGi3g1v0108600.3
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
2 domain predictions
1 GO term
LotjaGi3g1v0108600.4
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
2 domain predictions
1 GO term
LotjaGi3g1v0108600.6
n.a. Ankyrin repeat domain protein, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13397147 13399823 +
2 domain predictions
1 GO term
LotjaGi3g1v0108600.7
n.a. E3 ubiquitin-protein ligase KEG; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A0B2QMC9|A0A0B2QMC9_GLYSO E3 ubiquitin-protein ligase KEG; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13397147 13405194 +
2 domain predictions
1 GO term
LotjaGi4g1v0266600.1
n.a. Potassium channel; TAIR: AT2G26650.2 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|A0A1J7I327|A0A1J7I327_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0266600 LjG1.1_chr4 63143089 63150048 -
2 domain predictions
1 GO term
LotjaGi4g1v0266600.2
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|G7JV81|G7JV81_MEDTR Inwardly rectifying potassium channel subunit; Found in the gene: LotjaGi4g1v0266600 LjG1.1_chr4 63143089 63150585 -
2 domain predictions
1 GO term
LotjaGi4g1v0294800.1
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G57740.1 hypothetical protein; Swiss-Prot: sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32; TrEMBL-Plants: tr|G7JEC0|G7JEC0_MEDTR E3 ubiquitin-protein ligase XBOS32; Found in the gene: LotjaGi4g1v0294800 LjG1.1_chr4 66709138 66715155 -
2 domain predictions
1 GO term
LotjaGi5g1v0061400.1
n.a. Potassium channel; TAIR: AT2G26650.1 K+ transporter 1; Swiss-Prot: sp|Q38998|AKT1_ARATH Potassium channel AKT1; TrEMBL-Plants: tr|I1M9L1|I1M9L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0061400 LjG1.1_chr5 10269430 10276923 +
2 domain predictions
1 GO term
LotjaGi5g1v0260800.1
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT5G20350.1 Ankyrin repeat family protein with DHHC zinc finger domain-containing protein; Swiss-Prot: sp|Q01484|ANK2_HUMAN Ankyrin-2; TrEMBL-Plants: tr|D3J163|D3J163_MEDTR Ankyrin repeat, PH and SEC7 domain secG-like protein; Found in the gene: LotjaGi5g1v0260800 LjG1.1_chr5 56951400 56957427 +
2 domain predictions
1 GO term
LotjaGi5g1v0358900.2
n.a. Ankyrin-repeat protein; TAIR: AT3G12360.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A3KBV8|A3KBV8_LOTJA IGN1; Found in the gene: LotjaGi5g1v0358900 LjG1.1_chr5 67337880 67341160 +
2 domain predictions
1 GO term