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Lj2g3v1574130.2

Overview

Field Value
Gene ID Lj2g3v1574130
Transcript ID Lj2g3v1574130.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3-like [Cicer arietinum] gi|502161818|ref|XP_004512293.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 – –
MobiDBLite
mobidb-lite
35 232 198 – –
PANTHER
PTHR15348
173 253 81 1.40E-54 –
PANTHER
PTHR15348:SF0
173 253 81 1.40E-54 –
MobiDBLite
mobidb-lite
278 300 23 – –
PANTHER
PTHR15348:SF0
356 577 222 1.40E-54 –
PANTHER
PTHR15348
356 577 222 1.40E-54 –
SUPERFAMILY
SSF46774
491 577 87 3.27E-21
IPR001606
Gene3D
G3DSA:1.10.150.60
497 577 81 5.30E-20
IPR001606
SMART
SM01014
498 577 80 7.20E-11 –
ProSiteProfiles
PS51011
501 577 77 19.994
IPR001606
SMART
SM00501
502 577 76 7.70E-14
IPR001606
Pfam
PF01388
504 573 70 6.10E-12
IPR001606

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj2g3v1574130.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1574130.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.