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PF01388

Source: Pfam

Description

ARID/BRIGHT DNA binding domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 44

Transcript Name Description Predicted domains Domain count
Lj0g3v0195299.1
– PREDICTED: high mobility group B protein 10-like [Cicer arietinum] gi|502117956|ref|XP_004496029.1|
Domains
16
Lj0g3v0293379.1
– PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 [Cicer arietinum] gi|502157133|ref|XP_004510770.1|
Domains
12
Lj0g3v0300819.2
– PREDICTED: high mobility group B protein 9-like [Glycine max] gi|356508987|ref|XP_003523234.1|
Domains
15
Lj1g3v2692560.1
– PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 [Cicer arietinum] gi|502105266|ref|XP_004492764.1|
Domains
11
Lj1g3v3404420.1
– ARID/BRIGHT DNA binding domain containing protein [Lotus japonicus] gi|171986594|gb|ACB59277.1|
Domains
10
Lj1g3v3404430.1
–
Domains
17
Lj1g3v4740410.1
– PREDICTED: high mobility group B protein 10-like [Cicer arietinum] gi|502117956|ref|XP_004496029.1|
Domains
16
Lj1g3v4740410.2
– PREDICTED: high mobility group B protein 10-like [Cicer arietinum] gi|502117956|ref|XP_004496029.1|
Domains
16
Lj2g3v1574130.1
– PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3-like [Cicer arietinum] gi|502161818|ref|XP_004512293.1|
Domains
16
Lj2g3v1574130.2
– PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3-like [Cicer arietinum] gi|502161818|ref|XP_004512293.1|
Domains
10
Lj2g3v2017660.2
– Lysine-specific demethylase 5D [Medicago truncatula] gi|357481617|ref|XP_003611094.1|
Domains
35
Lj3g3v1933050.2
– PREDICTED: high mobility group B protein 10-like isoform X1 [Cicer arietinum] gi|502127395|ref|XP_004499691.1|
Domains
17
Lj3g3v2575730.1
– PREDICTED: AT-rich interactive domain-containing protein 4-like [Cicer arietinum] gi|502156614|ref|XP_004510562.1|
Domains
10
Lj3g3v2575730.2
– PREDICTED: AT-rich interactive domain-containing protein 4-like [Cicer arietinum] gi|502156614|ref|XP_004510562.1|
Domains
15
Lj4g3v2973660.1
– PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 [Cicer arietinum] gi|502139231|ref|XP_004503692.1|
Domains
10
Lj5g3v0659640.1
– PREDICTED: AT-rich interactive domain-containing protein 1-like [Vitis vinifera] gi|359489825|ref|XP_002276148.2|
Domains
8
Lj6g3v1149670.1
– PREDICTED: AT-rich interactive domain-containing protein 4-like isoform X1 [Cicer arietinum] gi|502086233|ref|XP_004488152.1|
Domains
11
LotjaGi1g1v0205900.1
– High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900
Domains
19
LotjaGi1g1v0205900.2
– High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900
Domains
19
LotjaGi1g1v0205900.3
– High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900
Domains
19
LotjaGi1g1v0240800.1
– High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0240800
Domains
18
LotjaGi1g1v0240800.2
– High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|A0A151TCP3|A0A151TCP3_CAJCA AT-rich interactive domain-containing protein 2; Found in the gene: LotjaGi1g1v0240800
Domains
12
LotjaGi1g1v0433000_LC.1
– High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0433000_LC
Domains
11
LotjaGi1g1v0478400.1
– AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|K7LG34|K7LG34_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478400
Domains
17
LotjaGi1g1v0553900.1
– High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|G7KWP7|G7KWP7_MEDTR High mobility group B-like protein; Found in the gene: LotjaGi1g1v0553900
Domains
21
LotjaGi1g1v0570000.1
– AT-rich interactive domain protein; TAIR: AT1G76510.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5; TrEMBL-Plants: tr|G3M3K3|G3M3K3_LOTJA ARID and Hsp20 domains containing protein; Found in the gene: LotjaGi1g1v0570000
Domains
19
LotjaGi1g1v0737100.1
– High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100
Domains
19
LotjaGi1g1v0737100.2
– High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|A0A0B2NSU7|A0A0B2NSU7_GLYSO High mobility group B protein 9; Found in the gene: LotjaGi1g1v0737100
Domains
11
LotjaGi1g1v0737100.3
– High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100
Domains
19
LotjaGi2g1v0352200_LC.1
– AT-rich interactive domain protein; TAIR: AT2G17410.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3; TrEMBL-Plants: tr|V7CL72|V7CL72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0352200_LC
Domains
18
LotjaGi2g1v0433900.1
– Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900
Domains
40
LotjaGi2g1v0433900.2
– Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900
Domains
41
LotjaGi3g1v0331700.1
– High mobility group family; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A1J7IK62|A0A1J7IK62_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331700
Domains
19
LotjaGi3g1v0384700.1
– AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2SPI1|A0A0B2SPI1_GLYSO AT-rich interactive domain-containing protein 1; Found in the gene: LotjaGi3g1v0384700
Domains
16
LotjaGi3g1v0384700.2
– AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2SPI1|A0A0B2SPI1_GLYSO AT-rich interactive domain-containing protein 1; Found in the gene: LotjaGi3g1v0384700
Domains
16
LotjaGi3g1v0408800.1
– AT-rich interactive domain protein; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|V7AT26|V7AT26_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0408800
Domains
18
LotjaGi3g1v0408800.2
– AT-rich interactive domain-containing protein 4; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|I1MK64|I1MK64_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0408800
Domains
18
LotjaGi4g1v0428500.1
– AT-rich interactive domain protein; TAIR: AT4G11400.1 ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LDD4|ARID2_ARATH AT-rich interactive domain-containing protein 2; TrEMBL-Plants: tr|A0A0B2NSA8|A0A0B2NSA8_GLYSO AT-rich interactive domain-containing protein 2; Found in the gene: LotjaGi4g1v0428500
Domains
12
LotjaGi4g1v0428500.2
– AT-rich interactive domain protein; TAIR: AT4G11400.1 ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LDD4|ARID2_ARATH AT-rich interactive domain-containing protein 2; TrEMBL-Plants: tr|K7KS19|K7KS19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0428500
Domains
12
LotjaGi5g1v0231300.2
– High mobility group B-like protein; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi5g1v0231300
Domains
18
LotjaGi5g1v0361200.1
– High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200
Domains
21
LotjaGi5g1v0361200.2
– High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200
Domains
21
LotjaGi5g1v0361200.3
– High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200
Domains
21
LotjaGi6g1v0220100.1
– AT-rich interactive domain-containing protein 4; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|I1L1V4|I1L1V4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0220100
Domains
22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.27