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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001606
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 45 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.121s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0190629.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 4 [Vitis vinifera] gi|225444591|ref|XP_002277324.1| chr0 93196369 93198474 +
2 domain predictions
1 GO term
Lj0g3v0195299.1
n.a. PREDICTED: high mobility group B protein 10-like [Cicer arietinum] gi|502117956|ref|XP_004496029.1| chr0 95287338 95290195 +
6 domain predictions
1 GO term
Lj0g3v0293379.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 [Cicer arietinum] gi|502157133|ref|XP_004510770.1| chr0 152279640 152283899 -
6 domain predictions
1 GO term
Lj0g3v0300819.2
n.a. PREDICTED: high mobility group B protein 9-like [Glycine max] gi|356508987|ref|XP_003523234.1| chr0 156350014 156354103 -
6 domain predictions
1 GO term
Lj1g3v2692560.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 [Cicer arietinum] gi|502105266|ref|XP_004492764.1| chr1 31237251 31242817 -
6 domain predictions
1 GO term
Lj1g3v3404420.1
n.a. ARID/BRIGHT DNA binding domain containing protein [Lotus japonicus] gi|171986594|gb|ACB59277.1| chr1 39265596 39272825 -
6 domain predictions
1 GO term
Lj1g3v3404430.1
n.a. n.a. chr1 39266129 39273164 -
6 domain predictions
1 GO term
Lj1g3v4740410.1
n.a. PREDICTED: high mobility group B protein 10-like [Cicer arietinum] gi|502117956|ref|XP_004496029.1| chr1 56665072 56668302 +
6 domain predictions
1 GO term
Lj1g3v4740410.2
n.a. PREDICTED: high mobility group B protein 10-like [Cicer arietinum] gi|502117956|ref|XP_004496029.1| chr1 56665072 56668302 +
6 domain predictions
1 GO term
Lj2g3v1574130.1
n.a. PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3-like [Cicer arietinum] gi|502161818|ref|XP_004512293.1| chr2 25078866 25085822 +
6 domain predictions
1 GO term
Lj2g3v1574130.2
n.a. PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3-like [Cicer arietinum] gi|502161818|ref|XP_004512293.1| chr2 25078866 25082379 +
6 domain predictions
1 GO term
Lj2g3v2017660.2
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481617|ref|XP_003611094.1| chr2 30947152 30961927 -
6 domain predictions
1 GO term
Lj3g3v1933050.2
n.a. PREDICTED: high mobility group B protein 10-like isoform X1 [Cicer arietinum] gi|502127395|ref|XP_004499691.1| chr3 24919048 24925339 -
6 domain predictions
1 GO term
Lj3g3v2575730.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 4-like [Cicer arietinum] gi|502156614|ref|XP_004510562.1| chr3 31336255 31345200 -
6 domain predictions
1 GO term
Lj3g3v2575730.2
n.a. PREDICTED: AT-rich interactive domain-containing protein 4-like [Cicer arietinum] gi|502156614|ref|XP_004510562.1| chr3 31336255 31345200 -
6 domain predictions
1 GO term
Lj4g3v2973660.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1 [Cicer arietinum] gi|502139231|ref|XP_004503692.1| chr4 39332469 39337928 -
6 domain predictions
1 GO term
Lj5g3v0659640.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 1-like [Vitis vinifera] gi|359489825|ref|XP_002276148.2| chr5 9237068 9242467 -
6 domain predictions
1 GO term
Lj6g3v1149670.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 4-like isoform X1 [Cicer arietinum] gi|502086233|ref|XP_004488152.1| chr6 14055982 14063850 +
5 domain predictions
1 GO term
LotjaGi1g1v0205900.1
n.a. High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900 LjG1.1_chr1 44745852 44755994 +
4 domain predictions
1 GO term
LotjaGi1g1v0205900.2
n.a. High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900 LjG1.1_chr1 44745859 44755839 +
4 domain predictions
1 GO term
LotjaGi1g1v0205900.3
n.a. High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900 LjG1.1_chr1 44747562 44755994 +
4 domain predictions
1 GO term
LotjaGi1g1v0240800.1
n.a. High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0240800 LjG1.1_chr1 57434305 57438441 +
4 domain predictions
1 GO term
LotjaGi1g1v0240800.2
n.a. High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|A0A151TCP3|A0A151TCP3_CAJCA AT-rich interactive domain-containing protein 2; Found in the gene: LotjaGi1g1v0240800 LjG1.1_chr1 57434305 57438441 +
4 domain predictions
1 GO term
LotjaGi1g1v0433000_LC.1
n.a. High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0433000_LC LjG1.1_chr1 92785353 92787339 -
4 domain predictions
1 GO term
LotjaGi1g1v0478400.1
n.a. AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|K7LG34|K7LG34_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478400 LjG1.1_chr1 99016994 99022681 -
4 domain predictions
1 GO term
LotjaGi1g1v0553900.1
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|G7KWP7|G7KWP7_MEDTR High mobility group B-like protein; Found in the gene: LotjaGi1g1v0553900 LjG1.1_chr1 108585696 108592126 +
4 domain predictions
1 GO term
LotjaGi1g1v0570000.1
n.a. AT-rich interactive domain protein; TAIR: AT1G76510.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5; TrEMBL-Plants: tr|G3M3K3|G3M3K3_LOTJA ARID and Hsp20 domains containing protein; Found in the gene: LotjaGi1g1v0570000 LjG1.1_chr1 110285783 110293588 -
4 domain predictions
1 GO term
LotjaGi1g1v0737100.1
n.a. High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 LjG1.1_chr1 131114757 131118038 +
4 domain predictions
1 GO term
LotjaGi1g1v0737100.2
n.a. High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|A0A0B2NSU7|A0A0B2NSU7_GLYSO High mobility group B protein 9; Found in the gene: LotjaGi1g1v0737100 LjG1.1_chr1 131114836 131118039 +
4 domain predictions
1 GO term
LotjaGi1g1v0737100.3
n.a. High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 LjG1.1_chr1 131114848 131118000 +
4 domain predictions
1 GO term
LotjaGi2g1v0352200_LC.1
n.a. AT-rich interactive domain protein; TAIR: AT2G17410.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3; TrEMBL-Plants: tr|V7CL72|V7CL72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0352200_LC LjG1.1_chr2 82824402 82832288 +
4 domain predictions
1 GO term
LotjaGi2g1v0433900.1
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93045415 93061638 -
4 domain predictions
1 GO term
LotjaGi2g1v0433900.2
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93046189 93061632 -
4 domain predictions
1 GO term
LotjaGi3g1v0331700.1
n.a. High mobility group family; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A1J7IK62|A0A1J7IK62_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331700 LjG1.1_chr3 70067235 70075574 -
4 domain predictions
1 GO term
LotjaGi3g1v0384700.1
n.a. AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2SPI1|A0A0B2SPI1_GLYSO AT-rich interactive domain-containing protein 1; Found in the gene: LotjaGi3g1v0384700 LjG1.1_chr3 77957860 77962279 -
4 domain predictions
1 GO term
LotjaGi3g1v0384700.2
n.a. AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2SPI1|A0A0B2SPI1_GLYSO AT-rich interactive domain-containing protein 1; Found in the gene: LotjaGi3g1v0384700 LjG1.1_chr3 77957924 77962103 -
4 domain predictions
1 GO term
LotjaGi3g1v0408800.1
n.a. AT-rich interactive domain protein; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|V7AT26|V7AT26_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0408800 LjG1.1_chr3 81227100 81236024 -
4 domain predictions
1 GO term
LotjaGi3g1v0408800.2
n.a. AT-rich interactive domain-containing protein 4; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|I1MK64|I1MK64_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0408800 LjG1.1_chr3 81227732 81231223 -
4 domain predictions
1 GO term
LotjaGi4g1v0428500.1
n.a. AT-rich interactive domain protein; TAIR: AT4G11400.1 ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LDD4|ARID2_ARATH AT-rich interactive domain-containing protein 2; TrEMBL-Plants: tr|A0A0B2NSA8|A0A0B2NSA8_GLYSO AT-rich interactive domain-containing protein 2; Found in the gene: LotjaGi4g1v0428500 LjG1.1_chr4 80284184 80289694 -
4 domain predictions
1 GO term
LotjaGi4g1v0428500.2
n.a. AT-rich interactive domain protein; TAIR: AT4G11400.1 ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LDD4|ARID2_ARATH AT-rich interactive domain-containing protein 2; TrEMBL-Plants: tr|K7KS19|K7KS19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0428500 LjG1.1_chr4 80284184 80289694 -
4 domain predictions
1 GO term
LotjaGi5g1v0231300.2
n.a. High mobility group B-like protein; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi5g1v0231300 LjG1.1_chr5 53871614 53874542 +
4 domain predictions
1 GO term
LotjaGi5g1v0361200.1
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200 LjG1.1_chr5 67525860 67531259 -
4 domain predictions
1 GO term
LotjaGi5g1v0361200.2
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200 LjG1.1_chr5 67525860 67531467 -
4 domain predictions
1 GO term
LotjaGi5g1v0361200.3
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200 LjG1.1_chr5 67526221 67531124 -
4 domain predictions
1 GO term
LotjaGi6g1v0220100.1
n.a. AT-rich interactive domain-containing protein 4; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|I1L1V4|I1L1V4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0220100 LjG1.1_chr6 52346882 52355529 +
3 domain predictions
1 GO term