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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1758440 |
| Transcript ID | Lj2g3v1758440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: probable polyol transporter 6-like [Glycine max] gi|356540747|ref|XP_003538846.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 28 | 28 | – | – | |
| PANTHER | 15 | 507 | 493 | 5.20E-266 | – | |
| PANTHER | 15 | 507 | 493 | 5.20E-266 | – | |
| SUPERFAMILY | 16 | 239 | 224 | 9.81E-64 | ||
| TIGRFAM | 23 | 489 | 467 | 3.00E-83 | ||
| Phobius | 29 | 50 | 22 | – | – | |
| TMHMM | 35 | 57 | 23 | – | – | |
| ProSiteProfiles | 36 | 484 | 449 | 42.578 | ||
| CDD | 37 | 480 | 444 | 3.04E-25 | ||
| Pfam | 39 | 494 | 456 | 5.00E-87 | ||
| Gene3D | 40 | 218 | 179 | 1.60E-26 | – | |
| PRINTS | 44 | 54 | 11 | 3.90E-16 | ||
| Phobius | 51 | 69 | 19 | – | – | |
| Phobius | 70 | 89 | 20 | – | – | |
| TMHMM | 72 | 94 | 23 | – | – | |
| ProSitePatterns | 90 | 107 | 18 | – | ||
| Phobius | 90 | 100 | 11 | – | – | |
| Phobius | 101 | 119 | 19 | – | – | |
| TMHMM | 101 | 120 | 20 | – | – | |
| Phobius | 120 | 124 | 5 | – | – | |
| TMHMM | 124 | 146 | 23 | – | – | |
| Phobius | 125 | 148 | 24 | – | – | |
| PRINTS | 127 | 146 | 20 | 3.90E-16 | ||
| ProSitePatterns | 132 | 157 | 26 | – | ||
| Phobius | 149 | 159 | 11 | – | – | |
| TMHMM | 159 | 181 | 23 | – | – | |
| Phobius | 160 | 177 | 18 | – | – | |
| Phobius | 178 | 188 | 11 | – | – | |
| Phobius | 189 | 210 | 22 | – | – | |
| TMHMM | 191 | 213 | 23 | – | – | |
| Phobius | 211 | 290 | 80 | – | – | |
| SUPERFAMILY | 267 | 491 | 225 | 9.81E-64 | ||
| Phobius | 291 | 313 | 23 | – | – | |
| TMHMM | 292 | 314 | 23 | – | – | |
| Gene3D | 292 | 485 | 194 | 8.70E-15 | – | |
| Phobius | 314 | 327 | 14 | – | – | |
| Phobius | 328 | 351 | 24 | – | – | |
| TMHMM | 329 | 351 | 23 | – | – | |
| ProSitePatterns | 347 | 364 | 18 | – | ||
| Phobius | 352 | 357 | 6 | – | – | |
| Phobius | 358 | 381 | 24 | – | – | |
| TMHMM | 358 | 380 | 23 | – | – | |
| Phobius | 382 | 392 | 11 | – | – | |
| Phobius | 393 | 418 | 26 | – | – | |
| TMHMM | 395 | 417 | 23 | – | – | |
| PRINTS | 396 | 417 | 22 | 3.90E-16 | ||
| PRINTS | 419 | 431 | 13 | 3.90E-16 | ||
| Phobius | 419 | 429 | 11 | – | – | |
| Phobius | 430 | 450 | 21 | – | – | |
| TMHMM | 430 | 452 | 23 | – | – | |
| Phobius | 451 | 455 | 5 | – | – | |
| Phobius | 456 | 477 | 22 | – | – | |
| TMHMM | 456 | 478 | 23 | – | – | |
| Phobius | 478 | 507 | 30 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v1758440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1758440.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.