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Lj2g3v1891000.1

Overview

Field Value
Gene ID Lj2g3v1891000
Transcript ID Lj2g3v1891000.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: floral homeotic protein APETALA 2-like [Glycine max] gi|356496919|ref|XP_003517312.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32467:SF18
1 466 466 1.30E-241 –
PANTHER
PTHR32467
1 466 466 1.30E-241
IPR031112
MobiDBLite
mobidb-lite
1 23 23 – –
MobiDBLite
mobidb-lite
45 66 22 – –
MobiDBLite
mobidb-lite
107 133 27 – –
Pfam
PF00847
132 181 50 5.30E-09
IPR001471
SUPERFAMILY
SSF54171
132 190 59 8.50E-16
IPR016177
CDD
cd00018
133 190 58 2.22E-11
IPR001471
SMART
SM00380
133 195 63 2.00E-31
IPR001471
ProSiteProfiles
PS51032
133 189 57 17.596
IPR001471
Gene3D
G3DSA:3.30.730.10
133 189 57 5.00E-17
IPR001471
Pfam
PF00847
224 271 48 8.00E-09
IPR001471
SUPERFAMILY
SSF54171
224 284 61 9.15E-17
IPR016177
CDD
cd00018
224 284 61 6.19E-25
IPR001471
SMART
SM00380
225 288 64 3.30E-30
IPR001471
ProSiteProfiles
PS51032
225 282 58 15.475
IPR001471
Gene3D
G3DSA:3.30.730.10
225 282 58 3.60E-16
IPR001471
PRINTS
PR00367
226 237 12 6.00E-06
IPR001471
PRINTS
PR00367
264 284 21 6.00E-06
IPR001471
MobiDBLite
mobidb-lite
289 344 56 – –
MobiDBLite
mobidb-lite
419 450 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj2g3v1891000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1891000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.