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Lj2g3v1984810.1

Overview

Field	Value
Gene ID	Lj2g3v1984810
Transcript ID	Lj2g3v1984810.1
Lotus japonicus genome version	MG20 v3.0
Description	AT-hook DNA-binding family protein [Theobroma cacao] gi\|508776764\|gb\|EOY24020.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31100:SF14 View details on PTHR31100:SF14 Search for proteins/transripts with this domain View external data on PTHR31100:SF14	6	296	291	2.80E-162	–
PANTHER	PTHR31100 View details on PTHR31100 Search for proteins/transripts with this domain View external data on PTHR31100	6	296	291	2.80E-162	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	31	94	64	–	–
SUPERFAMILY	SSF117856 View details on SSF117856 Search for proteins/transripts with this domain View external data on SSF117856	100	235	136	5.49E-34	–
ProSiteProfiles	PS51742 View details on PS51742 Search for proteins/transripts with this domain View external data on PS51742	100	239	140	39.214	IPR005175 Show description in modal box View details on IPR005175 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.1330.80 View details on G3DSA:3.30.1330.80 Search for proteins/transripts with this domain View external data on G3DSA:3.30.1330.80	103	237	135	3.80E-36	–
CDD	cd11378 View details on cd11378 Search for proteins/transripts with this domain View external data on cd11378	104	187	84	4.84E-20	IPR005175 Show description in modal box View details on IPR005175 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03479 View details on PF03479 Search for proteins/transripts with this domain View external data on PF03479	104	216	113	2.70E-28	IPR005175 Show description in modal box View details on IPR005175 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	227	248	22	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1984810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1984810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.