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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1985340 |
| Transcript ID | Lj2g3v1985340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: tetraspanin-20-like isoform X1 [Cicer arietinum] gi|502160510|ref|XP_004511769.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 3 | 212 | 210 | 9.50E-101 | – | |
| PANTHER | 3 | 212 | 210 | 9.50E-101 | – | |
| Pfam | 9 | 140 | 132 | 3.70E-11 | ||
| PRINTS | 9 | 32 | 24 | 1.70E-05 | ||
| Phobius | 12 | 34 | 23 | – | – | |
| TMHMM | 13 | 35 | 23 | – | – | |
| Phobius | 35 | 82 | 48 | – | – | |
| TMHMM | 83 | 105 | 23 | – | – | |
| Phobius | 83 | 107 | 25 | – | – | |
| Phobius | 108 | 118 | 11 | – | – | |
| TMHMM | 118 | 137 | 20 | – | – | |
| Phobius | 119 | 137 | 19 | – | – | |
| Phobius | 138 | 165 | 28 | – | – | |
| Phobius | 166 | 188 | 23 | – | – | |
| PRINTS | 166 | 192 | 27 | 1.70E-05 | ||
| TMHMM | 166 | 188 | 23 | – | – | |
| Phobius | 189 | 283 | 95 | – | – | |
| MobiDBLite | 212 | 283 | 72 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj2g3v1985340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1985340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.