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Lj2g3v2001580.2

Overview

Field	Value
Gene ID	Lj2g3v2001580
Transcript ID	Lj2g3v2001580.2
Related isoforms 2	Lj2g3v2001580.1 Lj2g3v2001580.3
Lotus japonicus genome version	MG20 v3.0
Description	Agenet domain containing protein expressed [Medicago truncatula] gi\|357482073\|ref\|XP_003611322.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31917:SF7 View details on PTHR31917:SF7 Search for proteins/transripts with this domain View external data on PTHR31917:SF7	2	1445	1444	0	–
PANTHER	PTHR31917 View details on PTHR31917 Search for proteins/transripts with this domain View external data on PTHR31917	2	1445	1444	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	202	226	25	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	574	611	38	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	637	854	218	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	935	966	32	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1083	1103	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	1348	1368	21	–	–
PANTHER	PTHR31917:SF7 View details on PTHR31917:SF7 Search for proteins/transripts with this domain View external data on PTHR31917:SF7	1468	1673	206	0	–
PANTHER	PTHR31917 View details on PTHR31917 Search for proteins/transripts with this domain View external data on PTHR31917	1468	1673	206	0	–
SMART	SM00743 View details on SM00743 Search for proteins/transripts with this domain View external data on SM00743	1506	1570	65	0.27	IPR014002 Show description in modal box View details on IPR014002 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05641 View details on PF05641 Search for proteins/transripts with this domain View external data on PF05641	1511	1573	63	2.80E-12	IPR008395 Show description in modal box View details on IPR008395 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00743 View details on SM00743 Search for proteins/transripts with this domain View external data on SM00743	1597	1655	59	3.60E-10	IPR014002 Show description in modal box View details on IPR014002 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 29

Expression data

Expression pattern

Expression pattern of Lj2g3v2001580.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2001580.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.