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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2082320 |
| Transcript ID | Lj2g3v2082320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: respiratory burst oxidase homolog protein F-like isoform 1 [Glycine max] gi|356497271|ref|XP_003517484.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 45 | 45 | 8.40E-16 | ||
| Phobius | 1 | 165 | 165 | – | – | |
| PANTHER | 1 | 552 | 552 | 0 | – | |
| PANTHER | 1 | 552 | 552 | 0 | – | |
| SFLD | 4 | 728 | 725 | 0 | – | |
| SUPERFAMILY | 6 | 124 | 119 | 1.48E-15 | ||
| Gene3D | 7 | 57 | 51 | 8.80E-05 | ||
| CDD | 26 | 72 | 47 | 4.51E-06 | ||
| ProSiteProfiles | 42 | 77 | 36 | 11.668 | ||
| ProSitePatterns | 55 | 67 | 13 | – | ||
| Gene3D | 58 | 119 | 62 | 3.20E-05 | ||
| Coils | 73 | 93 | 21 | – | – | |
| SFLD | 161 | 549 | 389 | 0 | – | |
| TMHMM | 166 | 185 | 20 | – | – | |
| Phobius | 166 | 185 | 20 | – | – | |
| Phobius | 186 | 301 | 116 | – | – | |
| Pfam | 205 | 361 | 157 | 9.20E-20 | ||
| TMHMM | 244 | 263 | 20 | – | – | |
| TMHMM | 299 | 321 | 23 | – | – | |
| Phobius | 302 | 322 | 21 | – | – | |
| PRINTS | 306 | 329 | 24 | 2.50E-13 | ||
| Phobius | 323 | 342 | 20 | – | – | |
| TMHMM | 342 | 364 | 23 | – | – | |
| Phobius | 343 | 362 | 20 | – | – | |
| Phobius | 363 | 373 | 11 | – | – | |
| Phobius | 374 | 391 | 18 | – | – | |
| TMHMM | 374 | 391 | 18 | – | – | |
| Phobius | 392 | 728 | 337 | – | – | |
| ProSiteProfiles | 400 | 520 | 121 | 14.812 | ||
| SUPERFAMILY | 404 | 516 | 113 | 1.64E-16 | ||
| Pfam | 404 | 517 | 114 | 9.50E-33 | ||
| Gene3D | 406 | 479 | 74 | 1.10E-12 | – | |
| CDD | 407 | 670 | 264 | 1.87E-44 | – | |
| PRINTS | 506 | 519 | 14 | 2.50E-13 | ||
| Gene3D | 523 | 549 | 27 | 1.10E-12 | – | |
| SUPERFAMILY | 523 | 549 | 27 | 2.70E-09 | – | |
| Pfam | 524 | 710 | 187 | 7.00E-54 | ||
| TMHMM | 526 | 543 | 18 | – | – | |
| PRINTS | 529 | 546 | 18 | 2.50E-13 | ||
| MobiDBLite | 562 | 586 | 25 | – | – | |
| PANTHER | 585 | 728 | 144 | 0 | – | |
| PANTHER | 585 | 728 | 144 | 0 | – | |
| SUPERFAMILY | 589 | 728 | 140 | 2.70E-09 | – | |
| Gene3D | 589 | 636 | 48 | 1.10E-12 | – | |
| SFLD | 590 | 728 | 139 | 3.70E-13 | – | |
| Gene3D | 672 | 728 | 57 | 1.10E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peroxidase activity | Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces an oxygen molecule. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj2g3v2082320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2082320.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.