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Lj2g3v2089550.1

Overview

Field Value
Gene ID Lj2g3v2089550
Transcript ID Lj2g3v2089550.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: angio-associated migratory cell protein-like [Glycine max] gi|356576129|ref|XP_003556186.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19857
1 161 161 1.40E-94 –
ProSiteProfiles
PS50294
1 141 141 29.688
IPR017986
SUPERFAMILY
SSF50978
2 154 153 5.95E-34
IPR017986
Gene3D
G3DSA:2.130.10.10
2 153 152 2.50E-37
IPR015943
SMART
SM00320
6 45 40 4.50E-08
IPR001680
Pfam
PF00400
12 45 34 5.70E-08
IPR001680
ProSiteProfiles
PS50082
13 54 42 15.989
IPR001680
SMART
SM00320
48 90 43 0.025
IPR001680
Pfam
PF00400
49 88 40 6.20E-04
IPR001680
SMART
SM00320
93 132 40 4.90E-05
IPR001680
Pfam
PF00400
97 132 36 4.90E-05
IPR001680
ProSiteProfiles
PS50082
100 141 42 11.745
IPR001680
ProSitePatterns
PS00678
119 133 15 –
IPR019775

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v2089550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2089550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.