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Lj2g3v2099820.1

Overview

Field Value
Gene ID Lj2g3v2099820
Transcript ID Lj2g3v2099820.1
Lotus japonicus genome version MG20 v3.0
Description Porphobilinogen deaminase [Medicago truncatula] gi|357474093|ref|XP_003607331.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11557
15 343 329 2.40E-169
IPR000860
PIRSF
PIRSF001438
15 344 330 1.50E-115
IPR000860
CDD
cd13648
36 315 280 0 –
Hamap
MF_00260
36 336 301 33.894
IPR000860
SUPERFAMILY
SSF53850
37 254 218 5.21E-73 –
Pfam
PF01379
37 249 213 2.10E-72
IPR022417
Gene3D
G3DSA:3.40.190.10
37 145 109 2.20E-44 –
TIGRFAM
TIGR00212
37 335 299 2.10E-99
IPR000860
PRINTS
PR00151
80 100 21 4.10E-43
IPR000860
PRINTS
PR00151
111 130 20 4.10E-43
IPR000860
Gene3D
G3DSA:3.40.190.10
146 235 90 4.00E-32 –
PRINTS
PR00151
159 176 18 4.10E-43
IPR000860
PRINTS
PR00151
179 196 18 4.10E-43
IPR000860
SUPERFAMILY
SSF54782
256 343 88 6.67E-21
IPR022418
Gene3D
G3DSA:3.30.160.40
257 340 84 1.50E-18
IPR022418
Pfam
PF03900
262 334 73 7.50E-15
IPR022418
PRINTS
PR00151
266 283 18 4.10E-43
IPR000860
ProSitePatterns
PS00533
267 283 17 –
IPR022419

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004418
Molecular function Hydroxymethylbilane synthase activity Catalysis of the reaction: H(2)O + 4 porphobilinogen = hydroxymethylbilane + 4 NH(4)(+).
Subterm of
GO:0018160
Biological process Peptidyl-pyrromethane cofactor linkage The covalent binding of a pyrromethane (dipyrrin) cofactor to protein via the sulfur atom of cysteine forming dipyrrolylmethanemethyl-L-cysteine.
Subterm of
GO:0033014
Biological process Tetrapyrrole biosynthetic process The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj2g3v2099820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2099820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.