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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2197640 |
| Transcript ID | Lj2g3v2197640.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | NAC domain protein [Medicago truncatula] gi|357490459|ref|XP_003615517.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 547 | 547 | – | – | |
| PANTHER | 12 | 496 | 485 | 6.30E-207 | – | |
| PANTHER | 12 | 496 | 485 | 6.30E-207 | – | |
| SUPERFAMILY | 19 | 174 | 156 | 8.37E-61 | ||
| ProSiteProfiles | 24 | 174 | 151 | 55.966 | ||
| Pfam | 25 | 150 | 126 | 2.40E-27 | ||
| MobiDBLite | 180 | 209 | 30 | – | – | |
| MobiDBLite | 423 | 446 | 24 | – | – | |
| MobiDBLite | 459 | 478 | 20 | – | – | |
| MobiDBLite | 489 | 514 | 26 | – | – | |
| Phobius | 548 | 574 | 27 | – | – | |
| TMHMM | 552 | 574 | 23 | – | – | |
| Phobius | 575 | 580 | 6 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj2g3v2197640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2197640.1, powered by CORGI.
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