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Lj2g3v2748860.1

Overview

Field Value
Gene ID Lj2g3v2748860
Transcript ID Lj2g3v2748860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform 1 [Glycine max] gi|356552713|ref|XP_003544707.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14493:SF51
12 468 457 0 –
PANTHER
PTHR14493
12 468 457 0 –
SUPERFAMILY
SSF48403
25 163 139 2.33E-17
IPR020683
SMART
SM00248
27 57 31 4100
IPR002110
CDD
cd00204
27 172 146 3.56E-13 –
Gene3D
G3DSA:1.25.40.20
31 179 149 2.50E-17
IPR020683
Pfam
PF12796
70 140 71 4.00E-09
IPR020683
ProSiteProfiles
PS50297
74 183 110 15.645
IPR020683
SMART
SM00248
74 104 31 0.0022
IPR002110
ProSiteProfiles
PS50088
74 98 25 8.656
IPR002110
ProSiteProfiles
PS50088
109 144 36 10.606
IPR002110
SMART
SM00248
109 141 33 0.036
IPR002110
ProSiteProfiles
PS50103
263 290 28 13.338
IPR000571
SMART
SM00356
263 289 27 2.80E-05
IPR000571
Gene3D
G3DSA:4.10.1000.10
268 290 23 2.20E-04
IPR000571
Pfam
PF00642
268 288 21 3.60E-05
IPR000571
Gene3D
G3DSA:4.10.1000.10
295 327 33 7.10E-04
IPR000571
ProSiteProfiles
PS50103
298 322 25 6.427
IPR000571
SMART
SM00356
298 321 24 22
IPR000571
PANTHER
PTHR14493
486 664 179 0 –
PANTHER
PTHR14493:SF51
486 664 179 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj2g3v2748860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2748860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.