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Lj2g3v2843390.1

Overview

Field Value
Gene ID Lj2g3v2843390
Transcript ID Lj2g3v2843390.1
Lotus japonicus genome version MG20 v3.0
Description Ca(2+)-dependent DNase [Populus tomentosa] gi|60476854|gb|AAX21543.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12302
20 334 315 4.10E-126 –
ProSiteProfiles
PS50830
142 318 177 31.835
IPR016071
Gene3D
G3DSA:2.40.50.90
142 163 22 7.60E-35
IPR016071
SUPERFAMILY
SSF50199
144 160 17 1.29E-31
IPR016071
SMART
SM00318
200 318 119 1.70E-30
IPR016071
SUPERFAMILY
SSF50199
217 325 109 1.29E-31
IPR016071
Gene3D
G3DSA:2.40.50.90
220 325 106 7.60E-35
IPR016071
Pfam
PF00565
223 317 95 8.70E-27
IPR016071
ProSitePatterns
PS01284
263 273 11 –
IPR002071

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004518
Molecular function Nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj2g3v2843390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2843390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.