Domain Predictions — View

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PF00565

Source: Pfam

Description

Staphylococcal nuclease homologue

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0054689.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ca(2+)-dependent DNase [Populus tomentosa] gi\|60476854\|gb\|AAX21543.1\|	Domains G3DSA:2.40.50.90 IPR002071 IPR016071 PF00565 PS01284 PS50830 PTHR12302 SM00318 SSF50199	9
Lj1g3v1387020.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] gi\|356516458\|ref\|XP_003526911.1\|	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF2 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	19
Lj2g3v2843390.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ca(2+)-dependent DNase [Populus tomentosa] gi\|60476854\|gb\|AAX21543.1\|	Domains G3DSA:2.40.50.90 IPR002071 IPR016071 PF00565 PS01284 PS50830 PTHR12302 SM00318 SSF50199	9
Lj4g3v2861660.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] gi\|356508886\|ref\|XP_003523184.1\|	Domains G3DSA:2.40.50.90 IPR016071 IPR016685 PF00565 PTHR12302 PTHR12302:SF2 SSF50199	7
LotjaGi1g1v0072600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease; TAIR: AT2G40410.2 Ca(2+)-dependent nuclease family protein; Swiss-Prot: sp\|F4IH31\|CAN2_ARATH Staphylococcal-like nuclease CAN2; TrEMBL-Plants: tr\|I3SQI6\|I3SQI6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0072600	Domains G3DSA:2.40.50.90 IPR002071 IPR016071 IPR035437 NON_CYTOPLASMIC_DOMAIN PF00565 PS01284 PS50830 PTHR12302 PTHR12302:SF8 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00318 SSF50199 TMhelix	17
LotjaGi1g1v0331200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331200	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331200	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 cd04508 mobidb-lite	19
LotjaGi1g1v0331400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331400.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331400.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331400.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi1g1v0331400.8 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KBV2\|I1KBV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331400	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20
LotjaGi4g1v0416800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclease domain-containing protein 1; TAIR: AT5G07350.1 TUDOR-SN protein 1; Swiss-Prot: sp\|Q8VZG7\|TSN1_ARATH Ribonuclease TUDOR 1; TrEMBL-Plants: tr\|I1KP14\|I1KP14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0416800	Domains Coil G3DSA:2.30.30.140 G3DSA:2.40.50.90 IPR002999 IPR016071 IPR016685 IPR035437 PF00565 PF00567 PIRSF017179 PS50304 PS50830 PTHR12302 PTHR12302:SF9 SM00318 SM00333 SSF50199 SSF63748 cd04508 mobidb-lite	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.25