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Lj2g3v2901250.1

Overview

Field Value
Gene ID Lj2g3v2901250
Transcript ID Lj2g3v2901250.1
Lotus japonicus genome version MG20 v3.0
Description phosphatase-like protein Mtc923 [Medicago truncatula] gi|13123657|gb|AAK12935.1|AF323103_1
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23333:SF26
1 258 258 1.40E-152 –
PANTHER
PTHR23333
1 258 258 1.40E-152 –
MobiDBLite
mobidb-lite
1 20 20 – –
SUPERFAMILY
SSF102848
53 148 96 1.44E-28
IPR012989
SMART
SM00553
55 152 98 1.10E-36
IPR012989
ProSiteProfiles
PS51399
61 125 65 33.092
IPR012989
Pfam
PF08059
66 140 75 2.50E-28
IPR012989
MobiDBLite
mobidb-lite
119 176 58 – –
Gene3D
G3DSA:3.10.20.90
128 257 130 1.90E-34 –
SUPERFAMILY
SSF54236
135 256 122 1.03E-26
IPR029071
SMART
SM00166
177 258 82 8.10E-04
IPR001012
ProSiteProfiles
PS50033
180 257 78 20.803
IPR001012
Pfam
PF00789
182 257 76 1.80E-17
IPR001012

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v2901250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2901250.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.