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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001012
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.302s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0084689.1
n.a. PREDICTED: FAS-associated factor 2-B-like [Glycine max] gi|356564976|ref|XP_003550721.1| chr0 33737994 33740326 -
4 domain predictions
1 GO term
Lj0g3v0087339.1
n.a. PREDICTED: FAS-associated factor 2-B-like [Glycine max] gi|356576614|ref|XP_003556425.1| chr0 35487962 35489523 +
4 domain predictions
1 GO term
Lj0g3v0098329.2
n.a. UBX domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297799700|ref|XP_002867734.1| chr0 41612926 41615812 -
4 domain predictions
1 GO term
Lj0g3v0194529.1
n.a. Unknown protein [Arabidopsis thaliana] gi|14596001|gb|AAK68728.1| chr0 94903795 94904414 -
3 domain predictions
1 GO term
Lj0g3v0253199.1
n.a. PREDICTED: UBX domain-containing protein 7-like [Cicer arietinum] gi|502154165|ref|XP_004509607.1| chr0 131476062 131483209 +
3 domain predictions
1 GO term
Lj0g3v0253199.2
n.a. PREDICTED: UBX domain-containing protein 7-like [Cicer arietinum] gi|502154165|ref|XP_004509607.1| chr0 131479192 131483209 +
3 domain predictions
1 GO term
Lj0g3v0305739.1
n.a. PREDICTED: tether containing UBX domain for GLUT4-like isoform X1 [Cicer arietinum] gi|502091544|ref|XP_004489577.1| chr0 159385441 159391897 -
3 domain predictions
1 GO term
Lj0g3v0305739.2
n.a. PREDICTED: tether containing UBX domain for GLUT4-like isoform X2 [Cicer arietinum] gi|502091548|ref|XP_004489578.1| chr0 159385441 159391897 -
3 domain predictions
1 GO term
Lj1g3v3754960.1
n.a. PREDICTED: tether containing UBX domain for GLUT4-like [Glycine max] gi|356571465|ref|XP_003553897.1| chr1 43134417 43139960 -
3 domain predictions
1 GO term
Lj2g3v2901250.1
n.a. phosphatase-like protein Mtc923 [Medicago truncatula] gi|13123657|gb|AAK12935.1|AF323103_1 chr2 37703693 37706260 -
4 domain predictions
1 GO term
Lj2g3v3034090.1
n.a. PREDICTED: UBX domain-containing protein 6-like [Glycine max] gi|356524212|ref|XP_003530725.1| chr2 39213969 39217154 -
3 domain predictions
1 GO term
Lj4g3v0133570.1
n.a. PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Glycine max] gi|356555700|ref|XP_003546168.1| chr4 1402340 1404975 +
4 domain predictions
1 GO term
Lj4g3v3112910.1
n.a. PREDICTED: UBX domain-containing protein 6-like [Glycine max] gi|356524212|ref|XP_003530725.1| chr4 41448697 41451929 -
3 domain predictions
1 GO term
LotjaGi1g1v0064900.1
n.a. UBX domain-containing protein, putative; TAIR: AT4G15410.1 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma; Swiss-Prot: sp|Q7Y175|PUX5_ARATH Plant UBX domain-containing protein 5; TrEMBL-Plants: tr|Q9AXJ7|Q9AXJ7_MEDTR Phosphatase-like protein Mtc923; Found in the gene: LotjaGi1g1v0064900 LjG1.1_chr1 8992929 8998343 +
4 domain predictions
1 GO term
LotjaGi1g1v0618700.1
n.a. UBX domain-containing protein; TAIR: AT3G27310.1 plant UBX domain-containing protein 1; Swiss-Prot: sp|Q9LK22|PUX1_ARATH Plant UBX domain-containing protein 1; TrEMBL-Plants: tr|I3SAZ3|I3SAZ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0618700 LjG1.1_chr1 116563027 116569009 -
3 domain predictions
1 GO term
LotjaGi2g1v0083800.1
n.a. UBX domain-containing protein; TAIR: AT3G27310.1 plant UBX domain-containing protein 1; Swiss-Prot: sp|Q9LK22|PUX1_ARATH Plant UBX domain-containing protein 1; TrEMBL-Plants: tr|I1N7K5|I1N7K5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0083800 LjG1.1_chr2 23221282 23228273 +
3 domain predictions
1 GO term
LotjaGi2g1v0083800.2
n.a. UBX domain-containing protein; TAIR: AT3G27310.1 plant UBX domain-containing protein 1; Swiss-Prot: sp|Q9LK22|PUX1_ARATH Plant UBX domain-containing protein 1; TrEMBL-Plants: tr|I1N7K5|I1N7K5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0083800 LjG1.1_chr2 23221282 23228273 +
3 domain predictions
1 GO term
LotjaGi2g1v0431700.1
n.a. FAS-associated factor 2-B; TAIR: AT4G11740.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|F4JPR7|PUX8_ARATH Plant UBX domain-containing protein 8; TrEMBL-Plants: tr|I1K0C8|I1K0C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0431700 LjG1.1_chr2 92868553 92874093 -
4 domain predictions
1 GO term
LotjaGi3g1v0376600.1
n.a. UBX domain-containing protein 2; TAIR: AT4G00752.1 UBX domain-containing protein; Swiss-Prot: sp|Q4V3D3|PUX9_ARATH Plant UBX domain-containing protein 9; TrEMBL-Plants: tr|A0A072TZJ6|A0A072TZJ6_MEDTR Ara4-interacting protein; Found in the gene: LotjaGi3g1v0376600 LjG1.1_chr3 76910606 76924675 -
4 domain predictions
1 GO term
LotjaGi3g1v0376600.2
n.a. FAS-associated factor 2-B; TAIR: AT4G11740.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|F4JPR7|PUX8_ARATH Plant UBX domain-containing protein 8; TrEMBL-Plants: tr|A0A1J7HI96|A0A1J7HI96_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376600 LjG1.1_chr3 76910606 76924765 -
4 domain predictions
1 GO term
LotjaGi4g1v0010800.1
n.a. UBX domain-containing protein, putative; TAIR: AT4G04210.1 plant UBX domain containing protein 4; Swiss-Prot: sp|Q8RWU7|PUX4_ARATH Plant UBX domain-containing protein 4; TrEMBL-Plants: tr|I3SVF6|I3SVF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0010800 LjG1.1_chr4 1363856 1367179 +
4 domain predictions
1 GO term
LotjaGi4g1v0151000.1
n.a. UBX domain-containing protein; TAIR: AT1G14570.1 UBX domain-containing protein; Swiss-Prot: sp|Q94JZ8|PUX7_ARATH Plant UBX domain-containing protein 7; TrEMBL-Plants: tr|I1MMM9|I1MMM9_SOYBN UBX domain-containing protein; Found in the gene: LotjaGi4g1v0151000 LjG1.1_chr4 24873422 24881805 +
3 domain predictions
1 GO term
LotjaGi4g1v0231200.1
n.a. FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|A0A151TT74|A0A151TT74_CAJCA FAS-associated factor 2-B; Found in the gene: LotjaGi4g1v0231200 LjG1.1_chr4 54243216 54246067 +
4 domain predictions
1 GO term
LotjaGi4g1v0455600.1
n.a. UBX domain-containing protein; TAIR: AT2G01650.1 plant UBX domain-containing protein 2; Swiss-Prot: sp|Q9ZU93|PUX2_ARATH Plant UBX domain-containing protein 2; TrEMBL-Plants: tr|I1KQ73|I1KQ73_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455600 LjG1.1_chr4 82716182 82719816 -
3 domain predictions
1 GO term
LotjaGi5g1v0199500.1
n.a. FAS-associated factor 2-B-like protein; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 LjG1.1_chr5 49735104 49746530 +
4 domain predictions
1 GO term
LotjaGi5g1v0199500.2
n.a. FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 LjG1.1_chr5 49735424 49745816 +
4 domain predictions
1 GO term
LotjaGi6g1v0289700.1
n.a. UBX domain-containing protein, putative; TAIR: AT4G04210.1 plant UBX domain containing protein 4; Swiss-Prot: sp|Q8RWU7|PUX4_ARATH Plant UBX domain-containing protein 4; TrEMBL-Plants: tr|A0A151T6S8|A0A151T6S8_CAJCA UBA and UBX domain-containing protein family; Found in the gene: LotjaGi6g1v0289700 LjG1.1_chr6 60693824 60697436 +
4 domain predictions
1 GO term