Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v3188450.3

Overview

Field Value
Gene ID Lj2g3v3188450
Transcript ID Lj2g3v3188450.3
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Cicer arietinum] gi|502099216|ref|XP_004491419.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM01141
1 109 109 3.20E-23
IPR019147
PANTHER
PTHR13161:SF15
1 851 851 1.90E-229 –
PANTHER
PTHR13161
1 851 851 1.90E-229 –
Pfam
PF09750
2 107 106 1.10E-16
IPR019147
MobiDBLite
mobidb-lite
47 95 49 – –
SUPERFAMILY
SSF109905
128 193 66 8.37E-18
IPR000061
SMART
SM00648
144 197 54 2.40E-16
IPR000061
Pfam
PF01805
145 193 49 1.70E-12
IPR000061
ProSiteProfiles
PS50128
146 188 43 14.9
IPR000061
MobiDBLite
mobidb-lite
257 294 38 – –
SUPERFAMILY
SSF109905
334 402 69 5.49E-14
IPR000061
SMART
SM00648
354 407 54 8.50E-10
IPR000061
Pfam
PF01805
355 402 48 2.30E-09
IPR000061
ProSiteProfiles
PS50128
356 398 43 14.441
IPR000061
MobiDBLite
mobidb-lite
407 449 43 – –
MobiDBLite
mobidb-lite
599 856 258 – –
Coils
Coil
667 701 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj2g3v3188450.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3188450.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.