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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3234600 |
| Transcript ID | Lj2g3v3234600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula] gi|357459939|ref|XP_003600251.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 51 | 51 | 6.20E-145 | – | |
| Gene3D | 1 | 58 | 58 | 1.70E-10 | ||
| SUPERFAMILY | 1 | 67 | 67 | 2.44E-12 | ||
| Phobius | 1 | 10 | 10 | – | – | |
| PANTHER | 1 | 51 | 51 | 6.20E-145 | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| Pfam | 1 | 38 | 38 | 1.00E-04 | ||
| ProSiteProfiles | 1 | 45 | 45 | 9.354 | ||
| Phobius | 11 | 18 | 8 | – | – | |
| Phobius | 19 | 23 | 5 | – | – | |
| Phobius | 24 | 230 | 207 | – | – | |
| MobiDBLite | 43 | 68 | 26 | – | – | |
| Gene3D | 59 | 151 | 93 | 2.00E-25 | ||
| CDD | 67 | 146 | 80 | 2.87E-48 | – | |
| PANTHER | 68 | 226 | 159 | 6.20E-145 | – | |
| PANTHER | 68 | 226 | 159 | 6.20E-145 | – | |
| ProSiteProfiles | 69 | 146 | 78 | 17.933 | ||
| SUPERFAMILY | 69 | 156 | 88 | 3.63E-26 | ||
| SMART | 70 | 142 | 73 | 2.10E-23 | ||
| Pfam | 71 | 127 | 57 | 2.10E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj2g3v3234600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3234600.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.