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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3248940 |
| Transcript ID | Lj2g3v3248940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356552675|ref|XP_003544688.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 511 | 509 | 2.20E-270 | – | |
| PANTHER | 3 | 511 | 509 | 2.20E-270 | – | |
| ProSiteProfiles | 180 | 207 | 28 | 14.802 | ||
| SUPERFAMILY | 183 | 205 | 23 | 3.40E-05 | ||
| Gene3D | 184 | 205 | 22 | 3.10E-04 | ||
| Pfam | 231 | 309 | 79 | 2.40E-10 | ||
| ProSiteProfiles | 231 | 315 | 85 | 10.959 | ||
| Gene3D | 324 | 413 | 90 | 5.20E-13 | ||
| ProSiteProfiles | 333 | 408 | 76 | 11.537 | ||
| SMART | 334 | 404 | 71 | 2.60E-09 | ||
| CDD | 335 | 404 | 70 | 4.57E-36 | – | |
| SUPERFAMILY | 343 | 417 | 75 | 3.39E-14 | ||
| Pfam | 344 | 400 | 57 | 1.70E-08 | ||
| Coils | 456 | 476 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj2g3v3248940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3248940.1, powered by CORGI.
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