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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF12872
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.020s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1255830.1
n.a. Limkain-b1 [Medicago truncatula] gi|357464505|ref|XP_003602534.1| chr1 15154668 15161375 -
2 domain predictions
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Lj2g3v3248940.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356552675|ref|XP_003544688.1| chr2 41586559 41591473 -
2 domain predictions
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Lj6g3v0792120.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356527124|ref|XP_003532163.1| chr6 7816409 7820182 +
2 domain predictions
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Lj6g3v0792120.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356527124|ref|XP_003532163.1| chr6 7816409 7820692 +
2 domain predictions
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Lj6g3v0792120.3
n.a. PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356527124|ref|XP_003532163.1| chr6 7816409 7820692 +
2 domain predictions
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Lj6g3v0792120.4
n.a. PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356527124|ref|XP_003532163.1| chr6 7816409 7820692 +
2 domain predictions
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LotjaGi1g1v0019200.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389420 2394369 +
2 domain predictions
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LotjaGi1g1v0019200.2
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389420 2394472 +
2 domain predictions
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LotjaGi1g1v0019200.3
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389569 2394398 +
2 domain predictions
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LotjaGi1g1v0019200.4
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389569 2394398 +
2 domain predictions
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LotjaGi1g1v0315300.1
n.a. Meiosis arrest female protein 1; TAIR: AT5G09840.1 Putative endonuclease or glycosyl hydrolase; Swiss-Prot: sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1; TrEMBL-Plants: tr|A0A1J7GRS8|A0A1J7GRS8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0315300 LjG1.1_chr1 76120313 76127099 -
2 domain predictions
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LotjaGi4g1v0075500.1
n.a. Meiosis arrest female protein 1-like protein; TAIR: AT2G15560.1 Putative endonuclease or glycosyl hydrolase; Swiss-Prot: sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1; TrEMBL-Plants: tr|I1JDZ7|I1JDZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0075500 LjG1.1_chr4 9681925 9685300 +
2 domain predictions
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LotjaGi4g1v0075500.2
n.a. Meiosis arrest female protein 1-like protein; TAIR: AT2G15560.1 Putative endonuclease or glycosyl hydrolase; Swiss-Prot: sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1; TrEMBL-Plants: tr|I1JDZ7|I1JDZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0075500 LjG1.1_chr4 9682020 9685337 +
2 domain predictions
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LotjaGi4g1v0075500.3
n.a. Meiosis arrest female protein 1-like protein; TAIR: AT2G15560.1 Putative endonuclease or glycosyl hydrolase; Swiss-Prot: sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1; TrEMBL-Plants: tr|I1JDZ7|I1JDZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0075500 LjG1.1_chr4 9683335 9684924 +
2 domain predictions
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LotjaGi6g1v0149000.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0B2NQX3|A0A0B2NQX3_GLYSO Zinc finger CCCH domain-containing protein 18; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444767 42449395 +
2 domain predictions
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LotjaGi6g1v0149000.2
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0R0IVN5|A0A0R0IVN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444767 42449395 +
2 domain predictions
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LotjaGi6g1v0149000.3
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0B2NQX3|A0A0B2NQX3_GLYSO Zinc finger CCCH domain-containing protein 18; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444775 42450544 +
2 domain predictions
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LotjaGi6g1v0149000.4
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0R0IVN5|A0A0R0IVN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444775 42450544 +
2 domain predictions
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