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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3281250 |
| Transcript ID | Lj2g3v3281250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pectinesterase QRT1-like [Glycine max] gi|356553513|ref|XP_003545100.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 4 | 4 | – | – | |
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 5 | 18 | 14 | – | – | |
| TMHMM | 5 | 27 | 23 | – | – | |
| Phobius | 19 | 22 | 4 | – | – | |
| Phobius | 23 | 376 | 354 | – | – | |
| PANTHER | 36 | 116 | 81 | 8.00E-204 | – | |
| PANTHER | 36 | 116 | 81 | 8.00E-204 | – | |
| SUPERFAMILY | 53 | 374 | 322 | 6.91E-77 | ||
| Gene3D | 55 | 373 | 319 | 3.70E-102 | ||
| Pfam | 57 | 129 | 73 | 5.30E-09 | ||
| PANTHER | 141 | 375 | 235 | 8.00E-204 | – | |
| PANTHER | 141 | 375 | 235 | 8.00E-204 | – | |
| Pfam | 147 | 370 | 224 | 9.70E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of Lj2g3v3281250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3281250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.