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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3315650 |
| Transcript ID | Lj2g3v3315650.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase-like protein E6-like [Glycine max] gi|356553499|ref|XP_003545093.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 625 | 625 | 0 | – | |
| PANTHER | 1 | 625 | 625 | 0 | – | |
| Phobius | 1 | 533 | 533 | – | – | |
| Pfam | 3 | 279 | 277 | 3.60E-81 | ||
| SUPERFAMILY | 4 | 41 | 38 | 1.04E-07 | ||
| SUPERFAMILY | 156 | 277 | 122 | 1.04E-07 | ||
| Pfam | 298 | 618 | 321 | 4.90E-43 | ||
| SUPERFAMILY | 319 | 388 | 70 | 1.04E-07 | ||
| TMHMM | 424 | 446 | 23 | – | – | |
| TMHMM | 533 | 555 | 23 | – | – | |
| Phobius | 534 | 557 | 24 | – | – | |
| Phobius | 558 | 568 | 11 | – | – | |
| Phobius | 569 | 587 | 19 | – | – | |
| TMHMM | 570 | 592 | 23 | – | – | |
| Phobius | 588 | 598 | 11 | – | – | |
| TMHMM | 599 | 621 | 23 | – | – | |
| Phobius | 599 | 622 | 24 | – | – | |
| Phobius | 623 | 631 | 9 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj2g3v3315650.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3315650.2, powered by CORGI.
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