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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3318880 |
| Transcript ID | Lj2g3v3318880.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein transport protein SFT2-like [Cicer arietinum] gi|502099664|ref|XP_004491532.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 91 | 91 | – | – | |
| MobiDBLite | 1 | 27 | 27 | – | – | |
| PANTHER | 8 | 228 | 221 | 3.20E-134 | ||
| PANTHER | 8 | 228 | 221 | 3.20E-134 | – | |
| Phobius | 92 | 118 | 27 | – | – | |
| TMHMM | 96 | 118 | 23 | – | – | |
| Pfam | 103 | 215 | 113 | 5.50E-28 | ||
| Phobius | 119 | 123 | 5 | – | – | |
| Phobius | 124 | 143 | 20 | – | – | |
| TMHMM | 125 | 143 | 19 | – | – | |
| Phobius | 144 | 154 | 11 | – | – | |
| Phobius | 155 | 176 | 22 | – | – | |
| TMHMM | 158 | 175 | 18 | – | – | |
| Phobius | 177 | 181 | 5 | – | – | |
| Phobius | 182 | 204 | 23 | – | – | |
| TMHMM | 182 | 204 | 23 | – | – | |
| Phobius | 205 | 228 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of Lj2g3v3318880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3318880.1, powered by CORGI.
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