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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3337550 |
| Transcript ID | Lj2g3v3337550.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Calcium-transporting ATPase [Medicago truncatula] gi|357495317|ref|XP_003617947.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 141 | 141 | – | – | |
| MobiDBLite | 14 | 64 | 51 | – | – | |
| PANTHER | 43 | 1008 | 966 | 2.60E-150 | – | |
| PANTHER | 43 | 1008 | 966 | 2.60E-150 | – | |
| SUPERFAMILY | 127 | 205 | 79 | 5.10E-48 | – | |
| TMHMM | 142 | 159 | 18 | – | – | |
| Phobius | 142 | 159 | 18 | – | – | |
| Phobius | 160 | 170 | 11 | – | – | |
| Phobius | 171 | 191 | 21 | – | – | |
| TMHMM | 172 | 191 | 20 | – | – | |
| Pfam | 178 | 299 | 122 | 7.10E-09 | ||
| Phobius | 192 | 407 | 216 | – | – | |
| SUPERFAMILY | 211 | 290 | 80 | 5.10E-09 | – | |
| Gene3D | 257 | 302 | 46 | 2.10E-66 | ||
| Gene3D | 322 | 360 | 39 | 2.00E-18 | ||
| Gene3D | 406 | 633 | 228 | 2.00E-18 | ||
| TMHMM | 408 | 430 | 23 | – | – | |
| Phobius | 408 | 430 | 23 | – | – | |
| SUPERFAMILY | 408 | 460 | 53 | 5.10E-48 | – | |
| Phobius | 431 | 449 | 19 | – | – | |
| Phobius | 450 | 474 | 25 | – | – | |
| SUPERFAMILY | 464 | 484 | 21 | 7.07E-17 | ||
| Phobius | 475 | 809 | 335 | – | – | |
| SUPERFAMILY | 521 | 652 | 132 | 1.09E-10 | ||
| SUPERFAMILY | 609 | 852 | 244 | 7.07E-17 | ||
| Gene3D | 731 | 1008 | 278 | 2.10E-66 | ||
| SUPERFAMILY | 800 | 1008 | 209 | 5.10E-48 | – | |
| Phobius | 810 | 830 | 21 | – | – | |
| TMHMM | 810 | 832 | 23 | – | – | |
| Phobius | 831 | 841 | 11 | – | – | |
| Pfam | 835 | 1003 | 169 | 2.60E-25 | ||
| TMHMM | 837 | 859 | 23 | – | – | |
| Phobius | 842 | 862 | 21 | – | – | |
| Phobius | 863 | 882 | 20 | – | – | |
| Phobius | 883 | 906 | 24 | – | – | |
| TMHMM | 884 | 906 | 23 | – | – | |
| Phobius | 907 | 917 | 11 | – | – | |
| TMHMM | 916 | 938 | 23 | – | – | |
| Phobius | 918 | 938 | 21 | – | – | |
| Phobius | 939 | 949 | 11 | – | – | |
| Phobius | 950 | 972 | 23 | – | – | |
| TMHMM | 951 | 970 | 20 | – | – | |
| Phobius | 973 | 983 | 11 | – | – | |
| Phobius | 984 | 1004 | 21 | – | – | |
| TMHMM | 985 | 1004 | 20 | – | – | |
| Phobius | 1005 | 1043 | 39 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
Expression pattern of Lj2g3v3337550.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3337550.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.