Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v3339160.1

Overview

Field Value
Gene ID Lj2g3v3339160
Transcript ID Lj2g3v3339160.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Glycine max] gi|356551432|ref|XP_003544079.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23198
31 959 929 0 –
PANTHER
PTHR23198:SF0
31 959 929 0 –
SUPERFAMILY
SSF82215
34 183 150 1.06E-40
IPR007230
Gene3D
G3DSA:3.30.1610.10
36 182 147 1.30E-42
IPR007230
ProSiteProfiles
PS51434
40 176 137 44.058
IPR007230
Pfam
PF04096
42 176 135 1.90E-33
IPR007230
MobiDBLite
mobidb-lite
238 279 42 – –
Pfam
PF12110
551 832 282 1.50E-74
IPR021967

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005643
Cellular component Nuclear pore Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
Subterm of
Part of
GO:0006913
Biological process Nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.
Subterm of
GO:0017056
Molecular function Structural constituent of nuclear pore The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj2g3v3339160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3339160.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.