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GO:0017056

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description Structural constituent of nuclear pore
Full defintion The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules.
Subterm of

Relationships

The relationship of GO:0017056 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah
PMID
RNA Export through the NPC in Eukaryotes.Okamura M, Inose H, Masuda S
Genes (Basel). 2015 Mar 20; 6 (1): 124–49.PMID: 25802992

In eukaryotic cells, RNAs are transcribed in the nucleus and exported to the cytoplasm through the nuclear pore complex. The RNA molecules that are exported from the nucleus into the cytoplasm include messenger RNAs (mRNAs), ribosomal RNAs (rRNAs), transfer RNAs (tRNAs), small nuclear RNAs (snRNAs), micro RNAs (miRNAs), and viral mRNAs. Each RNA is transported by a specific nuclear export receptor. It is believed that most of the mRNAs are exported by Nxf1 (Mex67 in yeast), whereas rRNAs, snRNAs, and a certain subset of mRNAs are exported in a Crm1/Xpo1-dependent manner. tRNAs and miRNAs are exported by Xpot and Xpo5. However, multiple export receptors are involved in the export of some RNAs, such as 60S ribosomal subunit. In addition to these export receptors, some adapter proteins are required to export RNAs. The RNA export system of eukaryotic cells is also used by several types of RNA virus that depend on the machineries of the host cell in the nucleus for replication of their genome, therefore this review describes the RNA export system of two representative viruses. We also discuss the NPC anchoring-dependent mRNA export factors that directly recruit specific genes to the NPC.

Associated Lotus transcripts 34

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0129799.1
– Nucleoporin NUP188-like protein [Medicago truncatula] gi|357473981|ref|XP_003607275.1|
GO terms
1
Lj1g3v0683870.1
– PREDICTED: nuclear pore complex protein Nup107-like [Glycine max] gi|356519905|ref|XP_003528609.1|
GO terms
2
Lj1g3v2124920.1
– PREDICTED: nuclear pore complex protein Nup155-like [Glycine max] gi|356524549|ref|XP_003530891.1|
GO terms
3
Lj1g3v2124920.2
– PREDICTED: nuclear pore complex protein Nup155-like [Cicer arietinum] gi|502138295|ref|XP_004503352.1|
GO terms
3
Lj2g3v1828890.1
– PREDICTED: serine-rich adhesin for platelets-like [Cicer arietinum] gi|502160987|ref|XP_004511979.1|
GO terms
4
Lj2g3v3339160.1
– PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Glycine max] gi|356551432|ref|XP_003544079.1|
GO terms
3
Lj3g3v0043080.1
– Nucleoporin interacting component (Nup93/Nic96-like) family protein isoform 1 [Theobroma cacao] gi|508717303|gb|EOY09200.1|
GO terms
2
Lj3g3v0075720.1
– Nucleoporin interacting component (Nup93/Nic96-like) family protein isoform 1 [Theobroma cacao] gi|508717303|gb|EOY09200.1|
GO terms
2
Lj3g3v2576300.1
– PREDICTED: nuclear pore complex protein Nup107-like [Glycine max] gi|356519905|ref|XP_003528609.1|
GO terms
2
Lj4g3v3113120.1
– PREDICTED: nuclear pore complex protein Nup155-like [Glycine max] gi|356524549|ref|XP_003530891.1|
GO terms
3
Lj5g3v1264020.1
– PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 1 [Glycine max] gi|356549598|ref|XP_003543179.1|
GO terms
3
LotjaGi1g1v0006600.1
– Nuclear pore complex protein NUP96; TAIR: AT1G80680.1 SUPPRESSOR OF AUXIN RESISTANCE 3; Swiss-Prot: sp|Q8LLD0|NUP96_ARATH Nuclear pore complex protein NUP96; TrEMBL-Plants: tr|I1M679|I1M679_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0006600
GO terms
3
LotjaGi1g1v0009600.1
– Nuclear pore complex protein Nup133 family; TAIR: AT2G05120.2 Nucleoporin, Nup133/Nup155-like protein; Swiss-Prot: sp|F4IGA5|NU133_ARATH Nuclear pore complex protein NUP133; TrEMBL-Plants: tr|Q2UY13|Q2UY13_LOTJA Nucleoporin; Found in the gene: LotjaGi1g1v0009600
GO terms
1
LotjaGi1g1v0420500_LC.1
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC
GO terms
3
LotjaGi1g1v0420500_LC.2
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC
GO terms
3
LotjaGi1g1v0420500_LC.3
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC
GO terms
3
LotjaGi1g1v0420500_LC.4
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC
GO terms
3
LotjaGi1g1v0420500_LC.5
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC
GO terms
3
LotjaGi1g1v0420500_LC.6
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC
GO terms
3
LotjaGi1g1v0420500_LC.7
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC
GO terms
3
LotjaGi1g1v0600000.1
– Nuclear pore complex protein NUP62; TAIR: AT2G45000.1 structural constituent of nuclear pore; Swiss-Prot: sp|Q8L7F7|NUP62_ARATH Nuclear pore complex protein NUP62; TrEMBL-Plants: tr|K7K2H1|K7K2H1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0600000
GO terms
2
LotjaGi1g1v0600000.2
– Nuclear pore glycoprotein p62; TAIR: AT2G45000.1 structural constituent of nuclear pore; Swiss-Prot: sp|Q8L7F7|NUP62_ARATH Nuclear pore complex protein NUP62; TrEMBL-Plants: tr|A0A0L9U778|A0A0L9U778_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0600000
GO terms
2
LotjaGi2g1v0349100.1
– Nuclear pore complex protein; TAIR: AT1G10390.1 Nucleoporin autopeptidase; Swiss-Prot: sp|Q8RY25|NU98A_ARATH Nuclear pore complex protein NUP98A; TrEMBL-Plants: tr|A0A0L9UIU4|A0A0L9UIU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349100
GO terms
1
LotjaGi2g1v0397500.1
– Nuclear pore complex protein NUP58; TAIR: AT4G37130.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q8RWH9|NUP58_ARATH Nuclear pore complex protein NUP58; TrEMBL-Plants: tr|G7K9F1|G7K9F1_MEDTR Hydroxyproline-rich glycoprotein family protein, putative; Found in the gene: LotjaGi2g1v0397500
GO terms
4
LotjaGi3g1v0011200.1
– Nuclear pore complex protein Nup93a; TAIR: AT2G41620.1 Nucleoporin interacting component (Nup93/Nic96-like) family protein; Swiss-Prot: sp|O22224|NP93A_ARATH Nuclear pore complex protein NUP93A; TrEMBL-Plants: tr|Q2HVW5|Q2HVW5_MEDTR Nucleoporin interacting component, putative; Found in the gene: LotjaGi3g1v0011200
GO terms
2
LotjaGi3g1v0411500.1
– Nuclear pore complex protein Nup107; TAIR: AT3G14120.2 nuclear pore complex protein; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A0B2NWA3|A0A0B2NWA3_GLYSO Nuclear pore complex protein Nup107; Found in the gene: LotjaGi3g1v0411500
GO terms
2
LotjaGi4g1v0457000.4
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000
GO terms
3
LotjaGi4g1v0457000.6
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000
GO terms
3
LotjaGi4g1v0457000.7
– Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000
GO terms
3
LotjaGi5g1v0201600.1
– Nuclear pore complex protein; TAIR: AT1G10390.1 Nucleoporin autopeptidase; Swiss-Prot: sp|Q8RY25|NU98A_ARATH Nuclear pore complex protein NUP98A; TrEMBL-Plants: tr|V7BU57|V7BU57_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0201600
GO terms
3
LotjaGi6g1v0073400.1
– Nuclear pore complex-like protein; TAIR: AT5G05680.1 nuclear pore complex protein-like protein; Swiss-Prot: sp|Q9FFK6|NUP88_ARATH Nuclear pore complex protein NUP88; TrEMBL-Plants: tr|A0A151U9I0|A0A151U9I0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0073400
GO terms
4
LotjaGi6g1v0073400.2
– Nuclear pore complex-like protein; TAIR: AT5G05680.1 nuclear pore complex protein-like protein; Swiss-Prot: sp|Q9FFK6|NUP88_ARATH Nuclear pore complex protein NUP88; TrEMBL-Plants: tr|A0A151U9I0|A0A151U9I0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0073400
GO terms
4
LotjaGi6g1v0073400.3
– Nuclear pore complex-like protein; TAIR: AT5G05680.1 nuclear pore complex protein-like protein; Swiss-Prot: sp|Q9FFK6|NUP88_ARATH Nuclear pore complex protein NUP88; TrEMBL-Plants: tr|A0A151U9I0|A0A151U9I0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0073400
GO terms
4
LotjaGi6g1v0073400.4
– Nuclear pore complex-like protein; TAIR: AT5G05680.1 nuclear pore complex protein-like protein; Swiss-Prot: sp|Q9FFK6|NUP88_ARATH Nuclear pore complex protein NUP88; TrEMBL-Plants: tr|A0A151U9I0|A0A151U9I0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0073400
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0017056
Molecular function Structural constituent of nuclear pore 1 2.94