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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3413320 |
| Transcript ID | Lj2g3v3413320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max] gi|356554409|ref|XP_003545539.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 48 | 48 | – | – | |
| PANTHER | 21 | 348 | 328 | 2.00E-130 | – | |
| PANTHER | 21 | 348 | 328 | 2.00E-130 | ||
| PIRSF | 25 | 349 | 325 | 1.90E-103 | ||
| Phobius | 49 | 68 | 20 | – | – | |
| TMHMM | 49 | 66 | 18 | – | – | |
| Pfam | 51 | 342 | 292 | 2.70E-54 | ||
| Phobius | 69 | 79 | 11 | – | – | |
| TMHMM | 76 | 98 | 23 | – | – | |
| Phobius | 80 | 101 | 22 | – | – | |
| Phobius | 102 | 173 | 72 | – | – | |
| TMHMM | 119 | 141 | 23 | – | – | |
| TIGRFAM | 124 | 341 | 218 | 1.10E-28 | – | |
| TMHMM | 145 | 167 | 23 | – | – | |
| Phobius | 174 | 191 | 18 | – | – | |
| TMHMM | 174 | 191 | 18 | – | – | |
| Phobius | 192 | 202 | 11 | – | – | |
| Phobius | 203 | 227 | 25 | – | – | |
| TMHMM | 206 | 227 | 22 | – | – | |
| Phobius | 228 | 238 | 11 | – | – | |
| Phobius | 239 | 256 | 18 | – | – | |
| TMHMM | 240 | 257 | 18 | – | – | |
| Phobius | 257 | 267 | 11 | – | – | |
| TMHMM | 267 | 289 | 23 | – | – | |
| Phobius | 268 | 290 | 23 | – | – | |
| Phobius | 291 | 301 | 11 | – | – | |
| Phobius | 302 | 320 | 19 | – | – | |
| TMHMM | 302 | 324 | 23 | – | – | |
| Phobius | 321 | 325 | 5 | – | – | |
| Phobius | 326 | 343 | 18 | – | – | |
| TMHMM | 328 | 345 | 18 | – | – | |
| Phobius | 344 | 349 | 6 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. | ||
| Molecular function | Pyrimidine nucleotide-sugar transmembrane transporter activity | Enables the transfer of a pyrimidine nucleotide-sugar from one side of a membrane to the other. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Pyrimidine nucleotide-sugar transmembrane transport | The process in which a pyrimidine nucleotide-sugar is transported across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. |
Expression pattern of Lj2g3v3413320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3413320.1, powered by CORGI.
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