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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0015480 |
| Transcript ID | Lj3g3v0015480.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ATPase 9, plasma membrane-type-like [Glycine max] gi|356550652|ref|XP_003543699.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 86 | 86 | – | – | |
| PANTHER | 1 | 310 | 310 | 3.50E-240 | – | |
| Pfam | 1 | 163 | 163 | 1.00E-43 | ||
| PANTHER | 1 | 310 | 310 | 3.50E-240 | – | |
| SUPERFAMILY | 2 | 72 | 71 | 7.45E-21 | – | |
| Gene3D | 2 | 72 | 71 | 1.60E-22 | ||
| TIGRFAM | 4 | 202 | 199 | 3.00E-30 | ||
| PRINTS | 22 | 36 | 15 | 8.60E-12 | – | |
| SUPERFAMILY | 72 | 167 | 96 | 3.79E-20 | – | |
| Phobius | 87 | 110 | 24 | – | – | |
| TMHMM | 87 | 109 | 23 | – | – | |
| Phobius | 111 | 121 | 11 | – | – | |
| TMHMM | 122 | 144 | 23 | – | – | |
| Phobius | 122 | 144 | 23 | – | – | |
| Phobius | 145 | 310 | 166 | – | – | |
| Gene3D | 162 | 186 | 25 | 1.30E-07 | ||
| PRINTS | 172 | 186 | 15 | 8.60E-12 | – | |
| ProSitePatterns | 174 | 180 | 7 | – | ||
| SUPERFAMILY | 178 | 308 | 131 | 1.64E-20 | ||
| Gene3D | 187 | 310 | 124 | 2.70E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v0015480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0015480.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.