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Lj3g3v0258360.1

Overview

Field Value
Gene ID Lj3g3v0258360
Transcript ID Lj3g3v0258360.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc phosphodiesterase ELAC protein 2-like isoform X1 [Cicer arietinum] gi|502081097|ref|XP_004486765.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
46 68 23 – –
PANTHER
PTHR12553
101 214 114 7.20E-238 –
PANTHER
PTHR12553:SF49
101 214 114 7.20E-238 –
Gene3D
G3DSA:3.60.15.10
103 407 305 4.80E-47
IPR001279
SUPERFAMILY
SSF56281
104 256 153 8.38E-20
IPR001279
Pfam
PF13691
111 165 55 8.50E-17
IPR027794
PANTHER
PTHR12553
232 547 316 7.20E-238 –
PANTHER
PTHR12553:SF49
232 547 316 7.20E-238 –
MobiDBLite
mobidb-lite
258 279 22 – –
SUPERFAMILY
SSF56281
284 349 66 8.38E-20
IPR001279
PANTHER
PTHR12553:SF49
565 712 148 7.20E-238 –
PANTHER
PTHR12553
565 712 148 7.20E-238 –
Gene3D
G3DSA:3.60.15.10
575 688 114 1.20E-28
IPR001279
SUPERFAMILY
SSF56281
575 690 116 1.76E-17
IPR001279

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v0258360.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0258360.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.